Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02684 ATGCTCCTGGCATTCATGAATCTTTTCTCGCTGTGTTGGAAGCCCTTTGGCCGCGATGCTGATCGAATCGACTCTATCGGAGTCATCGGAAGCAGCTTCGGCGCCAAGGACGGCTTGCTCTGGTTCCGCGACGTCGGAAAATATGCCTCCGGCGATTTCTCCATGGCCGTCGTTCAGGCCAACCAGGTCCTCGAAGACCAGAGCCAGATCGAGTCTGGTCCTCTCGGCACCTTCATCGGCATTTACGACGGTCACGGAGGCCCCGACGCCTCCCGCTACGTTTGCGATCACTTGTTTCGCCATTTTCAAGCAATATTGGCTGAGTCAGGCGGGGTTGTGACGACTGAGACAATTGAAAGGGCGTTTCGCCAAACGGAAGAGGGGTACACTGCCCTTGTGTCAAGTTTGTGGAATGCTCGACCTCAAATTGCAAGTGCTGGGACCTGTTGTCTGGTTGGAGTGATATTTCAGCAGACACTCTTTGTGGCAAATGCGGGTGATTCTCGCGTTGTATTGGGTAAGAGAGTAGGCAACACTGGAGGTATGGCTGCAATTCAGCTGTCTACGGAGCACAATGCAAATCTTGAGGCTGTTAGACAGGAGCTCAGAGAATTACACCCTCATGATCCCCAAATTGTTGTCCTCAAACATGGAGTGTGGAGAGTAAAAGGCATTATTCAGGTTTCTAGATCCATAGGTGATGTATATTTGAAACATGCACAATTTAACCGGGAACCACTTAATGCAAAATTCAGACTTCCTGAACCTATGAACATGCCTATCTTGAGTGCTAGTCCCACTATAATTTCTCATGCTCTCCAACCAAATGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAGCACCTGAGTAATGAAAAGGCTGTGGATATCGTAAACAGCAATCCTCATGCAGGTAGTGCGAAGAGACTTATCAAGGCTGCCCTCCACGAAGCAGCAAGAAAACGAGAAATGCGATATTCAGACCTGCGCAAGATTGACAAGAAGGTTCGACGGCATTTTCATGATGATATATCTGTTATTGTTATATTCTTGAATCACGACCTTATTTCCAGAGGCACACTGCTAGACCCTCCACTTTCACTTCGAAGCGCACTCGATCACTGA 1131 0.4819 MLLAFMNLFSLCWKPFGRDADRIDSIGVIGSSFGAKDGLLWFRDVGKYASGDFSMAVVQANQVLEDQSQIESGPLGTFIGIYDGHGGPDASRYVCDHLFRHFQAILAESGGVVTTETIERAFRQTEEGYTALVSSLWNARPQIASAGTCCLVGVIFQQTLFVANAGDSRVVLGKRVGNTGGMAAIQLSTEHNANLEAVRQELRELHPHDPQIVVLKHGVWRVKGIIQVSRSIGDVYLKHAQFNREPLNAKFRLPEPMNMPILSASPTIISHALQPNDSFLIFASDGLWEHLSNEKAVDIVNSNPHAGSAKRLIKAALHEAARKREMRYSDLRKIDKKVRRHFHDDISVIVIFLNHDLISRGTLLDPPLSLRSALDH 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02684 376 Gene3D - 44 361 IPR036457 -
Cca11g02684 376 ProSitePatterns PPM-type phosphatase domain signature. 78 86 IPR000222 GO:0043169
Cca11g02684 376 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 4 376 - -
Cca11g02684 376 SMART PP2C_4 39 351 IPR001932 -
Cca11g02684 376 CDD PP2Cc 53 353 IPR001932 -
Cca11g02684 376 SUPERFAMILY PP2C-like 62 354 IPR036457 -
Cca11g02684 376 ProSiteProfiles PPM-type phosphatase domain profile. 52 353 IPR001932 -
Cca11g02684 376 PANTHER ALPHABET, ISOFORM E-RELATED 4 376 - -
Cca11g02684 376 Pfam Protein phosphatase 2C 76 323 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02684 Cca-Chr11 54268864 54273014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02684 1 373 PP2C-type Phosphatase Gene Family AT4G38520 57.853 1.58e-158 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02684 K01102 - gmx:100790813 707.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02684 11 54268864 54273014 Cca11g02684 11 54268864 54273014 ECH
Cca11g02684 11 54268864 54273014 Cca08g01773 08 49896777 49902547 PCT