Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca11g02681 | ATGGAACCGGGAAACCCTGCATCTACGCCCGAGCCCGAGTCACCAACCTCTCCTTCCGTCGGTTTCAACACTGACCAACTTCCCCACACCCACACGAGCCGCGCCTCCGACGACGAGGCTTCCGTTGACCCCGATATCGTGCGAGATGATCTCGAAGAACAACCGGAGGAGGAAGAAGATGGAGAGGATCTTTACAACGACAATTTCATGGATGATTATAGGAGGATGGAGGAGGCGGACCAGTTTGAATCGTTTGGGCTGGACGACTCGTTGGAGGATGAAAGGGATTTTGATCAGATCATGGAAGATCGAAGGGCTGCGGATGTTGAACTTGACAATCGCGATGGTCGCGCTACCAATCGCAGCAAGCTTCCCCAGCTTCTCCACGACCAGGATACAGATGATGACAGTCACAGGCCTTCTAAAAGGGCCCGAGCCGATTTCAGGCCTCCTGTACCAAGTGATGATGATTTTGATGGGATGCATAGTTCACCTGGAAGGTCACAACGAGGGCACTCAAGAGAGGATGTTCCTATGACCGATCAAACTGAGGATGACCAAGATGATGATGAATTTGATGATGACGCTGGGTATGAGATGTATCGTGTTCAAGGGACACTTAGAGAGTGGGTTACAAGAGATGAAGTGCGCCGCTTCATAGCCAGGAAATTCAAGGACTTCTTACTCACATATGTCAACCCAAAAAATGAACGTCAGGAGAAGGAATATGTGTGGCTTATTAATGAGATGGTGTCGGCTAGCAAGTGCAGTTTGGAGATAGATTACAAACAATTTATCTACGTTCATCCCAACATTGCCATTTGGCTGGCTGATGCGCCTCAGTCTGTTTTAGAAGTAATGGAAGATGTTACCAAAAGTGTTGTCTTTGATTTACATCCAAATTACAGAAATATACACCAAAAAATTTATGTACGCATATCCAACCTGCCAGTTTATGATCAGATTCGAAATATAAGGCAGATCCACTTGAATACAATGATTCGAATTGGTGGAGTTGTAACCAGACGCTCTGGAGTTTTCCCCCAGTTGCAGCAGGTGAAGTATGACTGTAACAAATGTGGAGCAATTTTGGGACCATTTTTCCAGAATTCTTATTCGGAGGTGAAAGTTGGATCCTGTCCAGAGTGTCAATCAAAAGGACCATTCACTGTCAATATTGAACAGACAATTTATAGGAATTTTCAGAAGCTTACACTCCAAGAGAGCCCAGGAATAGTTCCTGCCGGTCGGCTTCCGAGATACAAGGAAGTGATACTATTGAATGATCTGATTGATTGTGCTCGCCCTGGGGAAGAAATTGAGGTTACAGGTGTTTATACGAATAATTTTGACTTATCCCTAAATACAAAAAATGGGTTTCCAGTGTTTGCCACTGTTGTTGAGGCAAATTATGTTACAAAAAAACAAGACCTCTTCTCTTCCTACAAACTTACACAAGAAGACAAAGAAGAGATTGAAAATTTGGCCAGAGACCCCCGAATAGGAGAAAGGATTATCAAGTCTATTGCTCCATCAATTTATGGTCACGAGGACATAAAAACTGCAATAGCTTTAGCTATGTTTGGAGGCCAAGAAAAGAATGTGGAAGGAAAGCATCGACTGCGAGGAGATATAAATGTTCTTCTTCTTGGTGATCCAGGAACAGCAAAGTCTCAGTTTCTCAAGTACGTTGAAAAAACTGGGCAGAGAGCTGTATACACTACTGGCAAAGGGGCTTCTGCCGTGGGTCTCACAGCTGCAGTTCATAAGGATCCAGTCACAAGGGAGTGGACTCTCGAGGGGGGAGCCCTTGTTCTAGCGGACAAAGGAATTTGTCTTATTGATGAGTTTGACAAGATGAATGACCAGGATAGGGTAAGTATTCATGAAGCGATGGAGCAGCAGAGTATAAGCATATCAAAAGCAGGAATTGTTACTTCTCTCCAGGCACGCTGTTCTGTTATTGCTGCTGCAAATCCTATCGGAGGAAGATATGATTCCTCAAAAACATTTTCTCAAAATGTTGAATTGACAGATCCAATTATTTCTCGTTTTGACGTCCTATGTGTTGTGAAGGATGTTGTTGATCCGGTTGCTGATGAAATGCTTGCAACGTTTGTCGTTGACAGTCACTTCAAGTCACAACCCAAGGGTGGTAATAGAGATGATAGGTCTTATGGCGAGTCCCAAGATGTCCATGCATCTGCCATGCCAACCGATCCAGAGATACTTCCTCAAGAGCTACTGAAGAAGTACATTACATATGCCAAGTTGAATATATTTCCAAGGTTACAAGATGCCGATATGGATAAACTGGCCCACGTCTATGCCGAACTGCGGAGGGAATCTTCGCACGGACAAGGTGTCCCTATTGCCGTAAGGCACATTGAATCAATGATAAGGATGTCTGAAGCTCATGCTAGAATGCATCTCAGACATCATGTTATACAAGAGGATGTGGACATGGCAATTCGTGTGCTACTTGAATCGTTCATTTCAACGCAAAAATTTGGGGTGCAGAAAGCTCTTCAAAAGAGCTTTAGGAAGTATATGACTTTCAAGAGGGACTACAATGAATTGCTCCTTTATATTCTCCGCCAGCTTGTAAAGAATGCTTTGCATTTCGAAGAAATAGTCTCTGGATCTGCTTCTGGTCTAACGTATGTAGATGTCAAAGTGGATGATCTCTACAACAAGGCTCAAGAGCATGAAATTTATGATCTGAAACCATTCTTTAGTAGCAGTCACTTTTCAAGGGCCAATTTCGTATTGGATGAAGAACGGAAAGTGATCAGACATCACCTTACCAGATGA | 2814 | 0.4375 | MEPGNPASTPEPESPTSPSVGFNTDQLPHTHTSRASDDEASVDPDIVRDDLEEQPEEEEDGEDLYNDNFMDDYRRMEEADQFESFGLDDSLEDERDFDQIMEDRRAADVELDNRDGRATNRSKLPQLLHDQDTDDDSHRPSKRARADFRPPVPSDDDFDGMHSSPGRSQRGHSREDVPMTDQTEDDQDDDEFDDDAGYEMYRVQGTLREWVTRDEVRRFIARKFKDFLLTYVNPKNERQEKEYVWLINEMVSASKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEDVTKSVVFDLHPNYRNIHQKIYVRISNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGVYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSSYKLTQEDKEEIENLARDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIISRFDVLCVVKDVVDPVADEMLATFVVDSHFKSQPKGGNRDDRSYGESQDVHASAMPTDPEILPQELLKKYITYAKLNIFPRLQDADMDKLAHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRHHVIQEDVDMAIRVLLESFISTQKFGVQKALQKSFRKYMTFKRDYNELLLYILRQLVKNALHFEEIVSGSASGLTYVDVKVDDLYNKAQEHEIYDLKPFFSSSHFSRANFVLDEERKVIRHHLTR | 937 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca11g02681 | 937 | MobiDBLite | consensus disorder prediction | 43 | 66 | - | - | |
| Cca11g02681 | 937 | ProSitePatterns | MCM family signature. | 610 | 618 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Cca11g02681 | 937 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 331 | 348 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Cca11g02681 | 937 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 354 | 366 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Cca11g02681 | 937 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 389 | 403 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Cca11g02681 | 937 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 450 | 461 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Cca11g02681 | 937 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 465 | 476 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Cca11g02681 | 937 | Pfam | MCM AAA-lid domain | 747 | 831 | IPR041562 | - | |
| Cca11g02681 | 937 | MobiDBLite | consensus disorder prediction | 97 | 119 | - | - | |
| Cca11g02681 | 937 | MobiDBLite | consensus disorder prediction | 713 | 737 | - | - | |
| Cca11g02681 | 937 | MobiDBLite | consensus disorder prediction | 84 | 194 | - | - | |
| Cca11g02681 | 937 | Pfam | MCM OB domain | 321 | 448 | IPR033762 | - | |
| Cca11g02681 | 937 | MobiDBLite | consensus disorder prediction | 14 | 30 | - | - | |
| Cca11g02681 | 937 | SUPERFAMILY | Nucleic acid-binding proteins | 223 | 470 | IPR012340 | - | |
| Cca11g02681 | 937 | Gene3D | - | 214 | 318 | - | - | |
| Cca11g02681 | 937 | MobiDBLite | consensus disorder prediction | 715 | 729 | - | - | |
| Cca11g02681 | 937 | Pfam | MCM P-loop domain | 489 | 711 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cca11g02681 | 937 | Pfam | Mini-chromosome maintenance protein 2 | 37 | 193 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Cca11g02681 | 937 | PANTHER | DNA HELICASE | 138 | 926 | - | - | |
| Cca11g02681 | 937 | Gene3D | - | 322 | 447 | IPR012340 | - | |
| Cca11g02681 | 937 | MobiDBLite | consensus disorder prediction | 1 | 69 | - | - | |
| Cca11g02681 | 937 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 511 | 834 | IPR027417 | - | |
| Cca11g02681 | 937 | CDD | MCM2 | 504 | 830 | - | - | |
| Cca11g02681 | 937 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 138 | 926 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Cca11g02681 | 937 | SMART | mcm | 318 | 832 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Cca11g02681 | 937 | MobiDBLite | consensus disorder prediction | 127 | 180 | - | - | |
| Cca11g02681 | 937 | ProSiteProfiles | MCM family domain profile. | 501 | 707 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cca11g02681 | 937 | Gene3D | - | 481 | 854 | IPR027417 | - | |
| Cca11g02681 | 937 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 542 | 557 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cca11g02681 | 937 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 602 | 616 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cca11g02681 | 937 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 630 | 643 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cca11g02681 | 937 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 654 | 666 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cca11g02681 | 937 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 681 | 689 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cca11g02681 | 937 | Pfam | MCM N-terminal domain | 222 | 315 | IPR027925 | - | |
| Cca11g02681 | 937 | Gene3D | - | 349 | 399 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca11g02681 | Cca-Chr11 | 54238231 | 54243824 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca11g02681 | 21 | 932 | Core DNA Replication Machinery Family | AT1G44900 | 75.381 | 0.0 | 1368 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca11g02681 | K02540 | - | gmx:100799441 | 1707.96 |