Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02678 ATGACGTTTTTGAGCATCCAACTCAGGAGATGGCTGACGCAGGAAGCAGTATGGAGATTTGTTGGTTTTGTTTCAACCATTGTTGGGCTTCTTTGTTATGCTCTCAGCTCCTCCTTCGACTATCTATTCGGAGAGTGGAGCTTGTTGAAAATCTTCCTTTACAGTATTGTTAGTCTTTTAATCTGTCTCGGCAATATGTTTGCTAAGGCATGTCGGCACTCAACCACTCTCCGGTTCAAAGCTCATTCCTCATTCGTGGTTTTGACTGTCACATCTGTGTATTCCTATTTCGCTGATAAACTTGTGAATGGGAAACCAGATGCATATAGTTTGGTCTCGTGTGCTGCCTTTGCTATCATGTCACTCAGTCTCTCAAGACAAAGTTTTAGCTATGGTCTTGTTATTCTCCGTTCGTCCTTATCATACCCAAATGTTGGAGTTGGAGTCCAAGATGACGAACTCGCCCTCACCGAAACTAATGCAATAGTGCTTTACGTGGATCAACTGGCACTGGAACTGGCGCGTACCAATATCGATGCAACAACTCATGACTTATCTGAAAGAACTAGTAGCTCCTCCGAGATGACGCCAAGACTTGGCCAGAGTCAACCTAGGCTGCGCGCGAAGAAGCCGCGCTTCACCGTTTACCGGCTGACGGGGAAGAGCGCGCGCGTGCAGAGAAAAGTGAGGCTCCTGAAACTGTTAGTTCCCGGTTGCCGCAAAAAGCTTCTGGCGGATATTTTGGAAGAAGCCAATGATTACATATCCGCGCTTGAGATGCAGCTGCAAGATTGGAACAATAGGCGGCAGTTTACATCCCCTAGTAACTTCCATGCCGATGGAGTGAATGACCTATTTATCTCTCAGGCTGTAATAGAAAATGCACGAGCAAATGAAATTTTGAAACAGGCCCCATTCTTGATACCATTTACAAGCAGGGTTAAAATATTATCTTCTCAACTAGCTGCTGTTAGGCAAAGGCATGGATCTGAGGCTGTATTTACTAGAAACCAGTTCAGAATAAAACGAGAACGTATTTTGGAAGACGCTTATGATCAAATGAGCCAGTTGTCAGAATTAAACCTTCAGGGATTGATTCGTGTGACTTTTGTCAATGAATTTGGAGTTGAAGAGCCTGGAATTGATGGAGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAGTATGGATTATTTAAGGAGACAGCAGATCACCTGCTTTATCCTAATCCTGGATCTGGAATGATACATGAACAACATTTCCAATTTTTCCACTTCCTTGGCACTCTTCTTGCAAAGGCCATGTTTGAAGGGATTCTGGTTGATATACCATTTGCTACATTCTTCTTGAGCAAATTGAAACAAAAGCATATTTTCTTTCACCTAATCATATGGAAAGTACTCTTTGTTTGGGCCCAGAAAAGTAGGTCCAACATGACATATATGGACAACTTTTGGCATTGGACTCTAGTGGGGTCTCTCTCTAGTCTCTATGGCTATGGGGCAGAATCTCAATCTACGGTTGTTGAAATGGCATCACCACCATCACGCATGCTCATGaccaacaccaacaccaacaccaacaccaacacGGAGCGGTCACGTGACAGCAAGAGACGGAGAAAGAAGAAAGTgcaacagcaacatcaacagcaacagcaagaggaacagAGCAAGTGGAAATCGCAAGCGCAGCAACAAATCTACTCCTCCAAGCTGCGCCAAGCCTTAGCCAGAGTTCCGCGCCGAGCCAAAGCCGTGCGCGAAGCCGCGGACAGAGTGCTAGCCGCCACGGCCAAGGGGAGGAGCCGGTGGAGCCGAGCCATCCTCACCAACCGgctcaagctcaagctcaagctcaagctcaagctgaagctcaCCAAACAGAAGCGCCACAGAATCAGGCCCTCCAAGAAGCCGCGCCTCACCAGGAAAGTCAGGTTCCTCGGACGGTTAATCCCCGGTTGCCGCAAACAGCCTTTACCGGTCATTCTCCAAGAAACCATTGATTACATACCCGCGCTTCAGATGCAGATTCGAGCCATGACCAATCTCGTTAACCTTCTCGCCGcttcttcttcttcttcttcttcctcACCACAATAA 2127 0.4349 MTFLSIQLRRWLTQEAVWRFVGFVSTIVGLLCYALSSSFDYLFGEWSLLKIFLYSIVSLLICLGNMFAKACRHSTTLRFKAHSSFVVLTVTSVYSYFADKLVNGKPDAYSLVSCAAFAIMSLSLSRQSFSYGLVILRSSLSYPNVGVGVQDDELALTETNAIVLYVDQLALELARTNIDATTHDLSERTSSSSEMTPRLGQSQPRLRAKKPRFTVYRLTGKSARVQRKVRLLKLLVPGCRKKLLADILEEANDYISALEMQLQDWNNRRQFTSPSNFHADGVNDLFISQAVIENARANEILKQAPFLIPFTSRVKILSSQLAAVRQRHGSEAVFTRNQFRIKRERILEDAYDQMSQLSELNLQGLIRVTFVNEFGVEEPGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHFQFFHFLGTLLAKAMFEGILVDIPFATFFLSKLKQKHIFFHLIIWKVLFVWAQKSRSNMTYMDNFWHWTLVGSLSSLYGYGAESQSTVVEMASPPSRMLMTNTNTNTNTNTERSRDSKRRRKKKVQQQHQQQQQEEQSKWKSQAQQQIYSSKLRQALARVPRRAKAVREAADRVLAATAKGRSRWSRAILTNRLKLKLKLKLKLKLTKQKRHRIRPSKKPRLTRKVRFLGRLIPGCRKQPLPVILQETIDYIPALQMQIRAMTNLVNLLAASSSSSSSSPQ 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02678 708 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 648 698 IPR036638 GO:0046983
Cca11g02678 708 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 633 682 IPR011598 GO:0046983
Cca11g02678 708 MobiDBLite consensus disorder prediction 519 570 - -
Cca11g02678 708 MobiDBLite consensus disorder prediction 519 538 - -
Cca11g02678 708 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL6 237 468 - -
Cca11g02678 708 MobiDBLite consensus disorder prediction 183 200 - -
Cca11g02678 708 Gene3D Hect, E3 ligase catalytic domains 294 475 - -
Cca11g02678 708 CDD bHLH_AtIBH1_like 640 693 IPR044549 GO:0006355
Cca11g02678 708 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 237 468 IPR044611 GO:0000209|GO:0061630
Cca11g02678 708 Coils Coil 248 268 - -
Cca11g02678 708 MobiDBLite consensus disorder prediction 183 204 - -
Cca11g02678 708 Coils Coil 542 562 - -
Cca11g02678 708 Pfam HECT-domain (ubiquitin-transferase) 394 466 IPR000569 GO:0004842
Cca11g02678 708 SMART hect_3 354 642 IPR000569 GO:0004842
Cca11g02678 708 SUPERFAMILY Hect, E3 ligase catalytic domain 332 471 IPR035983 GO:0004842
Cca11g02678 708 ProSiteProfiles HECT domain profile. 358 468 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02678 Cca-Chr11 54209963 54230704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02678 562 707 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 44.681 7.63e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02678 K10589 - ccaj:109811045 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02678 11 54209963 54230704 Cca11g02678 11 54209963 54230704 ECH
Cca11g02678 11 54209963 54230704 Cca08g01775 08 49941032 49941634 PCT