Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02676 ATGGATGAGAAGGGAGAGAAAGAGGAAAACTCGAAACCATCGTCTACTACAGAAAATTTTGTGGCATTTTCTGATGAGATTTCAAACATGAGCTTCCCTTTCTCCCCTGCTTTCTCAAGCATATTTGACATGATGTCACCACTGCCACCCTCTTTcatgggcatgaACTTCGCTTTCTCCACCATCTTTGACACCATGCCACTATCTTCATGCGACGATCCAAAACCTTCCAACGTTGCTGGCTTCATGGACATGCTCGCTCTTCCTGATTATTCTTCTTCTTTATTTGATTGGCCTCAAAGCATCGCCGCCACGTCAGCACCACCGCCACCCCAAACCACCCACGCGCTTCCCTCGCCGCCCGGAGGCTCCGAGGTCCTCAACACTCCGCCGTCGCCCAACTCCTCGTCGGTTTCCTCCTCCTCGAATGAAgcctccgccaccgccgccgccgccgccgTCAACAAAGCAACGgaaaatgaaaatgaagcagaagaagaaaccatggaggcaggcaaaggagaagaagacaaagatcaagacaagactaagaaACAGCTCAAGCCAAAGAAGAAGAACCAAAAGAAGCAGAgagagccaagagttgctttcatgacaaagagtgaagtggatcaccttgacgatggttatcggtggcgcaagtacggtcagaaagccgtgaaaaacagcccacatcccaggagctactatcggtgcactactgcgaattgtggtgtgaagaagcgcgtggagcgttcctcagaggatccttcagtagtgatgacaacgtatgagggcacacacacgcaccccAGCCCCGCGGCGTCACGAGTGGGACTCGGGTTCGTGCATGAAGTAAGTGGGTTGGGAGGCACAACTGGTGTGGCTTCGACAAACTATGCGTTGCGACAACAACAGTTACATCGCCAACAGGAGTTGGAGCAACGAGCACATGCAGCAGCTGTGTTATATAACTCCACCTCAACGACACCTTTGGATGTTATTAACACGTCTTCTTGCATTAACTATGGCAATACGTCGTCGTTGAGTGCCTTCCTTCAGAACCAAGAGATTCATCCAGGTTTTGTACCATCTAGGGTGGTGAATCCTCATGCTTTTGTGAGGGATGATGGGCTTCTTCAGGACATTATTGTGCCAACGCAGATGAGGAATGAGGGCTTTTTTAATTTTCTGCGCTGTTTCAAATTGAAATTCGTTAAGAGACTATGGAGAGTTAAATTCCAATGA 1248 0.351 MDEKGEKEENSKPSSTTENFVAFSDEISNMSFPFSPAFSSIFDMMSPLPPSFMGMNFAFSTIFDTMPLSSCDDPKPSNVAGFMDMLALPDYSSSLFDWPQSIAATSAPPPPQTTHALPSPPGGSEVLNTPPSPNSSSVSSSSNEASATAAAAAVNKATENENEAEEETMEAGKGEEDKDQDKTKKQLKPKKKNQKKQREPRVAFMTKSEVDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTTANCGVKKRVERSSEDPSVVMTTYEGTHTHPSPAASRVGLGFVHEVSGLGGTTGVASTNYALRQQQLHRQQELEQRAHAAAVLYNSTSTTPLDVINTSSCINYGNTSSLSAFLQNQEIHPGFVPSRVVNPHAFVRDDGLLQDIIVPTQMRNEGFFNFLRCFKLKFVKRLWRVKFQ 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02676 415 MobiDBLite consensus disorder prediction 128 155 - -
Cca11g02676 415 Gene3D WRKY domain 197 274 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca11g02676 415 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 97 386 IPR044810 GO:0003700
Cca11g02676 415 Pfam WRKY DNA -binding domain 214 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca11g02676 415 Coils Coil 147 175 - -
Cca11g02676 415 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 97 386 - -
Cca11g02676 415 SUPERFAMILY WRKY DNA-binding domain 205 273 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca11g02676 415 ProSiteProfiles WRKY domain profile. 208 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca11g02676 415 MobiDBLite consensus disorder prediction 102 202 - -
Cca11g02676 415 SMART WRKY_cls 213 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca11g02676 415 MobiDBLite consensus disorder prediction 171 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02676 Cca-Chr11 54164635 54174238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02676 107 392 WRKY Transcription Factor Family AT2G47260 43.750 9.45e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca11g02676 WRKY 1.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02676 - - ccaj:109811048 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02676 11 54164635 54174238 Cca11g02676 11 54164635 54174238 ECH
Cca08g01778 08 50006353 50007405 Cca11g02676 11 54164635 54174238 PCT