Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02675 ATGACCTACCACAACTCGCGTCGGAGCCCCGGCGGCTTCCGCTCCGCCGCCCCCCCGCACCACCGCGCCTTCGACAGTCCGCCGCGTCGCTCTCCCGGCAGGGGCGGGGGCTTCCGGCCGATGGGCGGCGAGGGTCCTGGGGAATTCGGATTCAACGGCCACCAGCCGCCACCGCCGCTTGCCGGCCAGAAACGAGGGTTTCCTTTCTCCGGACGCGGTGGTTCTCCCGATCGTTTGGATGGTGGAAGTTTTGCCAAACTTTTTGTTGGATCTGTTCCTCGAACAGCCACTGAAGAAGATATTCGGCCATTGTTTGAAGAACATGGGACTGTGATTGAGGTTGCTCTCATCAAAGATAGAAAGACAGGACAACATCAAGGTTGCTGTTTCATAAAATATGGTACCTCAGAAGAAGCTGATCAGGCAATTAGAGCACTGCACAATCAACATACTCTTCCTGGAGGTGTTGGTCCAATCCAAGTGCGATATGCTGATGGTGAACGGGAACGCCTTGGTGCCGTTGAGTACAAATTATTCGTCGGTTCTCTGAACAAACAGGCCTCTGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGTCGGATTGAAGATGTATATCTTATGCGTGATGAGAAGAAACAAAGTCGTGGATGTGGTTTTGTTAAATACTCTCACAGAGATATGGCTCTGGCGGCTATTAATGGACTTAATGGAACCTACACAATGAGAGGTTGTGAGCAACCACTAATTGTTCGGTTTGCTGATCCCAAAAGGCCTCGTCAAGGAGATTCCAGGGGTCTTTCATTTGGTGGCCCAGGATTCGGTCCTAGATTTGATGCACCAGGCACAAGACATCCGTCTAATATTACAGATCCTATGGGTGATCGTATGCCTCCCCCTAATGCTTGGCGTCCAATGCATCCGCCTAATATGGGGCCTTCCTCTAATGCTGGTCTTCATGGCATGGGACCACCATTGCTTCCAAGATCTGGTGACATGGCATTGCCTACAAATGCAGGTGGTCCTATGACTGGCTTGGGTGGCTCCATAGATGGTCGTTATCAAGTTCAGTCTGTGCCATCGATGTCACAACAGAATTTCAATCAGCCCATGCCACAAATTCCACCAGTCAATCAACAAGTATCACCAATGCAGAAACCTATTCAATCATCTCAGGAACTGCCACCTTCCCACCAGATGTATCCTCAAGCACCTGTTCCCTACCCACAAACATCTCTTAGGCAGCATGGCCCCCCTCTCTCTGCTGGTCCTCTTCTGTCTCAGCAGATGCATGGAGTAAGTGCACAGTTTCCAACATCTCAGTCCCAAGCTCAACAGGGTGCTTTGTCTACTGCAATTCCTCAGACCCCTCTTGATACCGGAAAGCAATCTAATACTGCATTTACTACTCCAAATCAACAAGTTCCTCCCTCTGTGCAGCAACAGCCACTTCAGCCTCTTCAGCAATCCCCTTCTCCATTAGCTCAGATGTTGTCACAACAGACACAGACTTTGCAAGCAAGTTTTCATTCATCTCAGCAGGCCTTTTCCCAGCTTCAACAACAATTGCAGATGATGCAACCTTCTAGTCAAGCATTGACATTGCAGCAAAATGCAGAAACTACTAAAAAGCAGTCTCAATGGGTTGGAAATGTAGCACAAGTAGTGGCCAGCACTCATGCAGCTGCACCAGCTGCAGATGTGCCTTCATCCACTCCTGCTACTTCTGCCTTACCAGCTGCAATAAGCCAGAACATGGCTCTTGCCAAATGTAACTGGACAGAACATATCTCTCCGGAGGGCTTCAAGTATTACTATAACAGTGTCATTGGTGAAAGTCGGTGGGAAAAACCTGAGGAATTGACGTTATATGAACAAAAGCAACAGCGAAGGTCATCTGTTCAGCAGTCCCAAATTCAGACACAACCTTCAATACTACCTGCCCAACAAGCTGTACATATCCAACAGGTTCAACCCCAAAGTCATCTCCAAGGACAGGTTCTCCCTCAGCAACAAATACAGCAGCCTTTGTCTTCTTCATTCCAGGCATATGGAGCTGCGGGTCCTCAAAATGTTCAGGAAGTTGGTTATAAACACTTGCATGCATCGGTCATTTCTAGTGGTGATCCTGTTCGTTACTCACAGGGTATTCATTCTACACAAGAGTTGATGTGGAAAAATAAGCCTGCAGGAGTTTGA 2199 0.4848 MTYHNSRRSPGGFRSAAPPHHRAFDSPPRRSPGRGGGFRPMGGEGPGEFGFNGHQPPPPLAGQKRGFPFSGRGGSPDRLDGGSFAKLFVGSVPRTATEEDIRPLFEEHGTVIEVALIKDRKTGQHQGCCFIKYGTSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEIFSKYGRIEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINGLNGTYTMRGCEQPLIVRFADPKRPRQGDSRGLSFGGPGFGPRFDAPGTRHPSNITDPMGDRMPPPNAWRPMHPPNMGPSSNAGLHGMGPPLLPRSGDMALPTNAGGPMTGLGGSIDGRYQVQSVPSMSQQNFNQPMPQIPPVNQQVSPMQKPIQSSQELPPSHQMYPQAPVPYPQTSLRQHGPPLSAGPLLSQQMHGVSAQFPTSQSQAQQGALSTAIPQTPLDTGKQSNTAFTTPNQQVPPSVQQQPLQPLQQSPSPLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQALTLQQNAETTKKQSQWVGNVAQVVASTHAAAPAADVPSSTPATSALPAAISQNMALAKCNWTEHISPEGFKYYYNSVIGESRWEKPEELTLYEQKQQRRSSVQQSQIQTQPSILPAQQAVHIQQVQPQSHLQGQVLPQQQIQQPLSSSFQAYGAAGPQNVQEVGYKHLHASVISSGDPVRYSQGIHSTQELMWKNKPAGV 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02675 732 Pfam WW domain 592 618 IPR001202 GO:0005515
Cca11g02675 732 Gene3D - 588 635 - -
Cca11g02675 732 CDD WW 590 620 IPR001202 GO:0005515
Cca11g02675 732 Gene3D - 171 264 IPR012677 -
Cca11g02675 732 Gene3D - 81 170 IPR012677 -
Cca11g02675 732 MobiDBLite consensus disorder prediction 1 80 - -
Cca11g02675 732 MobiDBLite consensus disorder prediction 256 330 - -
Cca11g02675 732 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 150 IPR000504 GO:0003723
Cca11g02675 732 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 245 IPR000504 GO:0003723
Cca11g02675 732 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 53 690 - -
Cca11g02675 732 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 256 IPR000504 GO:0003723
Cca11g02675 732 SUPERFAMILY RNA-binding domain, RBD 176 279 IPR035979 GO:0003676
Cca11g02675 732 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 166 IPR000504 GO:0003723
Cca11g02675 732 ProSitePatterns WW/rsp5/WWP domain signature. 593 618 IPR001202 GO:0005515
Cca11g02675 732 PANTHER TRANSFORMER-2-RELATED 53 690 - -
Cca11g02675 732 ProSiteProfiles WW/rsp5/WWP domain profile. 593 620 IPR001202 GO:0005515
Cca11g02675 732 MobiDBLite consensus disorder prediction 362 502 - -
Cca11g02675 732 MobiDBLite consensus disorder prediction 362 417 - -
Cca11g02675 732 SMART ww_5 588 620 IPR001202 GO:0005515
Cca11g02675 732 SUPERFAMILY WW domain 592 625 IPR036020 GO:0005515
Cca11g02675 732 CDD RRM2_FCA 177 256 IPR034645 -
Cca11g02675 732 SMART rrm1_1 86 162 IPR000504 GO:0003723
Cca11g02675 732 SMART rrm1_1 177 252 IPR000504 GO:0003723
Cca11g02675 732 SUPERFAMILY RNA-binding domain, RBD 29 164 IPR035979 GO:0003676
Cca11g02675 732 MobiDBLite consensus disorder prediction 427 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02675 Cca-Chr11 54143832 54154995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02675 83 372 Eukaryotic Initiation Factors Gene Family AT1G71770 26.452 3.28e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02675 - - gmx:100798390 1118.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02675 11 54143832 54154995 Cca11g02675 11 54143832 54154995 ECH