Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02660 ATGGATGAAAAAGGAAGCAACGCCCTTAGCCTTAGTGAGGACGAGATGGACCTCCGAAGAGGCCCATGGACCGTCGATGAGGACCTCGCTCTCATCAATTACATTGCCACTCACGGCGAAGGTCGCTGGAACACCCTTGCCCTCTCTGCCGGGCTCAAACGAACGGGGAAGAGTTGCAGATTGAGGTGGCTCAATTATCTCCGTCCTGATGTTCGACGTGGAAACATCACACTTGAAGAACAGCTTTTGATTCTCGAGCTCCATTCTCGCTGGGGAAACCGATGGTCGAAAATTGCCCAATATTTACCGGGTAGAACCGACAATGAGATCAAGAACTATTGGAGAACCCGTGTCCAAAAGCATGCCAAGCAACTAAAATGTGACGTGAATAGCAAACAATTCAAGGACACCATGCGTTACCTTTGGATGCCAAGGTTGGTAGAGCGCATTCAAGCAGCCTCAGCTGCCTCGACCACCGCAACCATCGTGGCTAACGCCCCCACCGCCACCGTGGCAGCAACTGCAACGACCAACAATGCATACACACATGGGAACAACAATTTTGAGGTTCATAATCATAACCACAAAATGGGGTTGAGTCCTTCAGAGTATGTGGGTTCACAACATGTGACGACGCAAAGTTACACCCCGGAGAATAGTAACACTGCTGCGTCATCATCAGACTCGTTTGGGACTCAAGTCTCAACAATTTCTGATATCACTGACTATTACAGTGTTCCGGTGAGTGGTAACAAAAACAACAATTGTGCAGATTATTATCAACCCTCTCAAATTAGCTACTCGGATTGCATCACAAGCCCTTCTGGGTTGTTTCCTCATCAGGGACTCGATTTTCAAGCCGTGGAACCAAACAACCCGTGGAACATGCAAAGTGGGGACTCCTCCGACAATTTTTGGAATGTTGAAAACATGTTGTTCCTAGAGCAGCAACTCATGAATGACAACATGTGA 972 0.4805 MDEKGSNALSLSEDEMDLRRGPWTVDEDLALINYIATHGEGRWNTLALSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAASAASTTATIVANAPTATVAATATTNNAYTHGNNNFEVHNHNHKMGLSPSEYVGSQHVTTQSYTPENSNTAASSSDSFGTQVSTISDITDYYSVPVSGNKNNNCADYYQPSQISYSDCITSPSGLFPHQGLDFQAVEPNNPWNMQSGDSSDNFWNVENMLFLEQQLMNDNM 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02660 323 MobiDBLite consensus disorder prediction 208 231 - -
Cca11g02660 323 PANTHER MYB TRANSCRIPTION FACTOR 2 318 - -
Cca11g02660 323 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Cca11g02660 323 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Cca11g02660 323 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Cca11g02660 323 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 2 318 IPR044676 GO:0003700|GO:0006355|GO:0043565
Cca11g02660 323 Gene3D - 77 140 - -
Cca11g02660 323 SMART sant 72 120 IPR001005 -
Cca11g02660 323 SMART sant 19 69 IPR001005 -
Cca11g02660 323 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Cca11g02660 323 SUPERFAMILY Homeodomain-like 17 114 IPR009057 -
Cca11g02660 323 Gene3D - 17 73 - -
Cca11g02660 323 CDD SANT 22 67 IPR001005 -
Cca11g02660 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Cca11g02660 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02660 Cca-Chr11 53993941 53995983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02660 1 314 MYB Transcription Factor Family AT3G06490 52.367 5.13e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca11g02660 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02660 K09422 - gmx:100791349 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02660 11 53993941 53995983 Cca11g02660 11 53993941 53995983 ECH