Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02647 ATGGCTGAGACCACAAACTACATTCCCAACCCCCAATTAGAGCTTGAAGAGATACTGCAAGAAGCAGAACATCGATGGCTTCGACCTGCTGAAATATGTGAGATACTTCGCAATTATAAGAAGTTCAATTTGACACCCGATCCTCCAGTTAGGCCTCCAGCTGGGTCACTATTCTTGTTTGATCGAAAAGCACTTCGTTACTTTCGCAAGGATGGTCACCGGTGGAGGAAGAAAAAAGATGGGAAGACTGTAAGAGAAGCTCATGAAAAGTTGAAGGCTGGTAGTGTGGATGTCTTGCATTGTTACTATGCTCATGGTGAGGATAATGAGAACTTCCAACGGAGAAGTTATTGGATGCTTGATGAGCTGTTAGAGCACATTGTGCTTGTGCATTATCGAGAAATTAAAGAGGGCTGCAAGTCTGGCATCCCACATTTGCCTGTAGTTCCAGTAACCCTGGTTGATTCAGTGCCTTCCTCTTCCAAAATAAACTCATCAATATCTGTAGTTCAAACATCTTTCACATCGAATGCAAATAGAGTTGATCAGAATAGACAAGCTTCAGAGTATGAGGATGTCAATTCACAGAATGGTCCTCAAGTCTCCTCTCATGCTCAGCCTATCAGCAATTCTGTACCTTGGCTTACACATGAAGCCATAGGGTTTTCTGAGTTGTTGAGGAAGCCCTTGATTTCATCATGGCCATCTTCTTCCCCTAGCTATTCTCCTGGTACTGGGTTGTCTCCCTGTACCTTGATTCAGAACTCTAGCAGAAACACTATTAATATGCATGATAAAAAACATCATGTTGAAGGCTCTGAAGCTGACTTCGCTGTTCATAAGATAAGAAATGCTGGGTTAGATCCTGTCTGCAGAATGCAAGATGGTGTAATTTTCCGAGATAGGCTCATTGCTGACATGTTCATCCAGCCAGATAAAGAAGATTTGCTGACTGTTAATCAGATGCAAAACGAGAGTGGACAAGATTCTTTTCATTCTCAATTGCATGATCATAATAATCATCCAATTGCTGCAACTACTACAATCCTGGCTGAACAAAAGGTTCAAGTTGGTGATTCAGAAAATGGCGAGTCAGAACAAATAGAATATGGGGAAATGAAGAAACTTGATAGTTTTGGAAGGTGGATGAATAAGGAGATAGGTGGAGACTGTGACAATTCCTTGATGGCTTCAGATTCTGGTAATTATTGGAGTACACTTGATGCTCAAAATGAGGATAAGGAGGTATCTAGTTTACACCACATGCAGTTGGATATGGATTCATTAGGCCCTTCTCTTTCCCAAGAACAACTATTTAGTATCCATGATTTTTCTCCAGATTGGGCATATACTGGGGTTAGAACAAAGGTTTTAATAGTTGGCACATTTCTGGGGAGTAAAAAGCTCTCTAGTGAGACCAAATGGGGATGTATGTTTGGCAAAATTGAGGTTTCTGCTGAAGTTTTGGCTGATAATGTTATACGTTGTCAAACTCCTCTGCATTCACCTGGCCGAGTACCATTCTATGTTACCTGCAGTAATAGGTTAGCCTGCAGCGAGGTCAGGGAATTTGAATTTGATGAAAATCCAGCCAAATTTTTAGGTCCTGTGGGTATTAAAATCTCACCAGAAGATGAGGTACGGCTTCAAATGCGACTTCTTAAACTAGTAGACTTGGGACCTGACCATAAGTGGTGGAAATGCTCTGTTTCTGAATGTGAAAAATGTAAACTCAGGGGAATAATTTATTCCATGAGAGATGATAGTGGAGTATTTGAAGAAAGTTTCCAGATTGATGGGAATGGTCATATGAACCCTAGAGGTGTATTATTTCAGAGATTAATGAGAGACAAGCTTTATGAGTGGTTAATATGTAAGATTCATGAAGGAGGAAAAGGACCACATGTGTTGGATGATAAAGGCCAAGGAGTAATACATTTGGCAGCTGCACTTGGTTATGTGTGGGCTATGGCACCATTAGTTACTGTTGGTATCAGTCCTAACTTCAGAGACACTCGGGGAAGAACAGGACTTCACTGGGCATCATATTTTGGGAGAGAAGAAACTGTTATTGTGTTAGTCAAATTAGGTGCAGCCCCAGGTGCTGTTGAGGATCCAACATCAGCTTTTCCTCAAGGAAAGACGCCAGCAGATTTAGCTTCAAGTAGAGGACATAAAGGCATTGCTGCATACTTGGCCGAGGCTGATCTGACTAATCAATTATCTGTGTTGACTGTCAAGGATATTGAGACTGGCAACATTGCCACAACCTTGGCAGCTGACAGTGTTTATCAGTCTGCTGAAGATGACCCATCTAATATGACAATGGATGAGCAATGTTATCTCAAAGAATCACTTACAGTGTTTAGAAAATCAGCCCATGCAGCTGCTTCAATCCTAGCTGCCTTTAGAGCTAGGTCATTCTGTCAGAGGCAATTAGCTAAAAGTAGCAGTGATATTTCTGAAGCAGTACTTGACGTAGTTGCTGATTCTTTGAGCAAGGTGCAGAAGATGGGTCACTTTGAGGATTATTTACATTTGGCAGCTTTAAGGATTCAAAAGAGATATCGTGGATGGAAAGGAAGAAAAGATTTTTTGAAAATACGTGACCGCATTGTAAAAATTCAGGCTCATATCAGAGGACACCAAGTTCGTAAGCAGTACAAAAAAGTTGTTTGGTCTGTTAGCATTGTGGAAAAGGTGATATTGCGTTGGAGACGGAAAGGAGCTGGTCTGCGAGGGTTCCGGGCTGAGCAGCCAGTTGGTGTTGTAGCTAAAGATTCTGAGAAAAGTGACGAGTATGAATTTCTTAGCATTGGAAGGAGACAGAAAACAGATGGTGTAAAGAAAGCTCTGGATAGAATCAAGTCCATGGTTCGTAACCCAGAAGCAAGGGATCAGTATATGAGGCTCATCATGAAGTATCAGAAGTTTAAGGTTGATGATGGCGAAAGCTGTCAATCGCAGAATGAGGTTAGACTCTAA 2985 0.4147 MAETTNYIPNPQLELEEILQEAEHRWLRPAEICEILRNYKKFNLTPDPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVREAHEKLKAGSVDVLHCYYAHGEDNENFQRRSYWMLDELLEHIVLVHYREIKEGCKSGIPHLPVVPVTLVDSVPSSSKINSSISVVQTSFTSNANRVDQNRQASEYEDVNSQNGPQVSSHAQPISNSVPWLTHEAIGFSELLRKPLISSWPSSSPSYSPGTGLSPCTLIQNSSRNTINMHDKKHHVEGSEADFAVHKIRNAGLDPVCRMQDGVIFRDRLIADMFIQPDKEDLLTVNQMQNESGQDSFHSQLHDHNNHPIAATTTILAEQKVQVGDSENGESEQIEYGEMKKLDSFGRWMNKEIGGDCDNSLMASDSGNYWSTLDAQNEDKEVSSLHHMQLDMDSLGPSLSQEQLFSIHDFSPDWAYTGVRTKVLIVGTFLGSKKLSSETKWGCMFGKIEVSAEVLADNVIRCQTPLHSPGRVPFYVTCSNRLACSEVREFEFDENPAKFLGPVGIKISPEDEVRLQMRLLKLVDLGPDHKWWKCSVSECEKCKLRGIIYSMRDDSGVFEESFQIDGNGHMNPRGVLFQRLMRDKLYEWLICKIHEGGKGPHVLDDKGQGVIHLAAALGYVWAMAPLVTVGISPNFRDTRGRTGLHWASYFGREETVIVLVKLGAAPGAVEDPTSAFPQGKTPADLASSRGHKGIAAYLAEADLTNQLSVLTVKDIETGNIATTLAADSVYQSAEDDPSNMTMDEQCYLKESLTVFRKSAHAAASILAAFRARSFCQRQLAKSSSDISEAVLDVVADSLSKVQKMGHFEDYLHLAALRIQKRYRGWKGRKDFLKIRDRIVKIQAHIRGHQVRKQYKKVVWSVSIVEKVILRWRRKGAGLRGFRAEQPVGVVAKDSEKSDEYEFLSIGRRQKTDGVKKALDRIKSMVRNPEARDQYMRLIMKYQKFKVDDGESCQSQNEVRL 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02647 994 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 970 - -
Cca11g02647 994 Pfam IPT/TIG domain 441 518 IPR002909 -
Cca11g02647 994 ProSiteProfiles IQ motif profile. 868 896 IPR000048 GO:0005515
Cca11g02647 994 ProSiteProfiles IQ motif profile. 845 874 IPR000048 GO:0005515
Cca11g02647 994 ProSiteProfiles Ankyrin repeat region circular profile. 673 698 - -
Cca11g02647 994 MobiDBLite consensus disorder prediction 186 207 - -
Cca11g02647 994 Gene3D - 616 742 IPR036770 -
Cca11g02647 994 Gene3D Immunoglobulins 434 532 IPR013783 -
Cca11g02647 994 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Cca11g02647 994 CDD IPT 440 526 - -
Cca11g02647 994 Pfam IQ calmodulin-binding motif 870 889 IPR000048 GO:0005515
Cca11g02647 994 Pfam IQ calmodulin-binding motif 848 865 IPR000048 GO:0005515
Cca11g02647 994 Gene3D - 843 892 - -
Cca11g02647 994 SUPERFAMILY Ankyrin repeat 626 735 IPR036770 -
Cca11g02647 994 SMART ANK_2a 712 742 IPR002110 GO:0005515
Cca11g02647 994 SMART ANK_2a 673 702 IPR002110 GO:0005515
Cca11g02647 994 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Cca11g02647 994 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 840 895 IPR027417 -
Cca11g02647 994 SUPERFAMILY E set domains 441 526 IPR014756 -
Cca11g02647 994 SMART CG_1_2 18 136 IPR005559 GO:0003677
Cca11g02647 994 ProSiteProfiles Ankyrin repeat profile. 673 705 IPR002110 GO:0005515
Cca11g02647 994 SMART iq_5 844 866 IPR000048 GO:0005515
Cca11g02647 994 SMART iq_5 867 889 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02647 Cca-Chr11 53731552 53739714 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02647 119 990 CAMTA Transcription Factor Family AT5G09410 36.048 3.14e-161 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Cca11g02647 CG-1 5.6e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02647 K21596 - gmx:100818336 1680.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02647 11 53731552 53739714 Cca11g02647 11 53731552 53739714 ECH