Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02645 ATGGCAGAGACTTTCCTATACACCTCCGAGTCTGTGAACGAGGGACACCCCGACAAGCTCTGCGACCAAATCTCCGACGCTGTCCTCGACGCGTGTCTTGAACAGGACTCAGACAGCAAGGTCGCATGTGAAACATGCACCAAGACCAACCTTGTCATGGTCTTCGGAGAGATCACAACCAAGGCCAACGTTGACTACGAGAAGATCGTGCGCGACACCTGCAGGAAAATCGGCTTCGTCTCAGACGATGTGGGACTCGACGCCGACAACTGCAAAGTCCTCGTGAACATCGAGCAGCAGAGCCCCGACATCGCTCAAGGCGTGCACGGCCACCTCACCAAACGCCCTGAGGAAATCGGCGCCGGCGACCAGGGTCACATGTTCGGCTACGCCACCGATGAAACCCCGGAATTGATGCCACTGAGTCACGTCCTGGCGACCAAACTCGGTGCCAAACTCACCGAGGTTCGGAAGAATGGGACATGCCCTTGGCTGAGACCTGATGGGAAGACCCAAGTGACTGTTGAGTATTACAATGACAAGGGTGCAATGGTTCCTGTTCGTGTCCACACCGTGTTGATTTCAACTCAACATGATGAGACTGTGACGAACGATGAAattgcttctgatctgaaggagcacgtgatcaagcctgtgatccctgagaagtaccttgatgagaagaccatcttccacttgaacccttctgggcgttttgtgattggtgggccccacggtgatgctggtctcactgggaggaagattattattgatacctatggtggttggggtgctcatggtggtggtgccttctctgggaaggaccctaccaaggttgataggagtggggcctacattgtgaggcaagctgctaagagcattgtggccagtggacttgcaaggaggtgcattgtgcaagtttcttatgctattggggtgcctgagcctttgtctgtgtttgttgatacttatggcactgggaagattcctgataaggagattctcagcattgtgaaggagaattttgatttcaggcctgggatgatttctatcaaccttgatctcaagaggggtggcaacaacaggttcttgaagactgctgcttatggacactttggcagagaggaccctgacttcacttgggaagtggtcaagactctcaagtGGGAGAAGGCATAA 1179 0.2943 MAETFLYTSESVNEGHPDKLCDQISDAVLDACLEQDSDSKVACETCTKTNLVMVFGEITTKANVDYEKIVRDTCRKIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNDKGAMVPVRVHTVLISTQHDETVTNDEIASDLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILSIVKENFDFRPGMISINLDLKRGGNNRFLKTAAYGHFGREDPDFTWEVVKTLKWEKA 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02645 392 PIRSF MAT 1 392 IPR002133 GO:0004478|GO:0005524|GO:0006556
Cca11g02645 392 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 1 1 392 - -
Cca11g02645 392 SUPERFAMILY S-adenosylmethionine synthetase 116 240 IPR022636 GO:0004478|GO:0006556
Cca11g02645 392 Hamap S-adenosylmethionine synthase [metK]. 3 391 IPR002133 GO:0004478|GO:0005524|GO:0006556
Cca11g02645 392 ProSitePatterns S-adenosylmethionine synthase signature 1. 120 130 IPR022631 GO:0004478|GO:0006556
Cca11g02645 392 ProSitePatterns S-adenosylmethionine synthase signature 2. 267 275 IPR022631 GO:0004478|GO:0006556
Cca11g02645 392 Gene3D - 12 280 - -
Cca11g02645 392 Pfam S-adenosylmethionine synthetase, N-terminal domain 5 102 IPR022628 GO:0004478|GO:0006556
Cca11g02645 392 Gene3D - 118 382 - -
Cca11g02645 392 SUPERFAMILY S-adenosylmethionine synthetase 4 110 IPR022636 GO:0004478|GO:0006556
Cca11g02645 392 Gene3D - 5 243 - -
Cca11g02645 392 Pfam S-adenosylmethionine synthetase, C-terminal domain 241 382 IPR022630 GO:0004478|GO:0006556
Cca11g02645 392 CDD S-AdoMet_synt 6 385 - -
Cca11g02645 392 SUPERFAMILY S-adenosylmethionine synthetase 241 389 IPR022636 GO:0004478|GO:0006556
Cca11g02645 392 TIGRFAM metK: methionine adenosyltransferase 6 388 IPR002133 GO:0004478|GO:0005524|GO:0006556
Cca11g02645 392 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 1 392 IPR002133 GO:0004478|GO:0005524|GO:0006556
Cca11g02645 392 Pfam S-adenosylmethionine synthetase, central domain 118 239 IPR022629 GO:0004478|GO:0006556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02645 Cca-Chr11 53719136 53721896 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02645 K00789 - gmx:100799139 770
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02645 11 53719136 53721896 Cca11g02645 11 53719136 53721896 ECH
Cca11g02645 11 53719136 53721896 Cca03g02731 03 48652756 48665651 ECH
Cca11g02645 11 53719136 53721896 Cca02g01386 02 32356542 32357299 ECH
Cca11g02645 11 53719136 53721896 Cca02g01324 02 31553981 31557011 ECH