Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02643 ATGGAGTTAACTCCAAGAGGAAGAAACCAAGGTCATGTGTTGACCTTTGATAGAGATGCAGATTCGTTTGTGGAGGAAGATAAGGAGCTTCAGTCCAAGTGGGCTGCTATAGAGAAACTACCCACTTTCAAAAGGATTAAGACTTCTTTTGTTGATGTCAGTCAGGAGGAGAGTGGAAGCAGCAGCAGAGAAGCAGATGGCAAAAGGGTGGTTGATGTTACCAAGCTTGGAGCAGTGGAAAAGCGTTTGTTCATTGACAGGCTCATCAAGCACATTGAGAATGATAACCTCCAATTGCTGCAGAAACTAAGAGAAAGGATGGAAAGAGTTAATGTGAAGTTACCCACTGTGGAGGTCAAGTACAAGAACCTGCATGTTGCAGCAGAATGTGAGGTTGTTCAAGGGAAGCCACTCCCAACTCTATGGAACTCTTTTTCTAGCTCTCTTTCTGGATTCATGAAGACTATATCTTGTAATTCTCAAGGAGCAGAAATAAGCATTCTGAATGATGTCAGTGGTATCATAAAGCCATCAAGGCTTACTCTTCTTCTTGGTCCACCAGGCTGTGGGAAAACGACCTTGTTAATGGCACTGGCTGGAAAACTAGAGCAATCTCTCAAGgtttctggagaaatctcttacaatggttacaagctaaatgaatttgttcctcaaaaaacatcagcttacataagccagtatgacctgcatgttccagaaatgacagtgagagaaacaattgacttttcagcacgctgtcaaggtgttggaggcagagctgatctagtggctgaaatcaccaggagagaaaaagaagaaggaatcatccctgacccagatattgatacctatatgaaggcaatttcagttgaaggacaaagtgaaaatcttcaaacagaatacgttttaaagattcttggactggatatctgtgctgacatactggtaggtgatgcactagatagaggtatttctggtggacagaagaaaaggctaactacaggagagatgattgtgggtccaataaaagctctttttatggatgaaatatcaaccggcttggacagctccacgacctttcaaatagttacatgtctccagcaattggtgcacatcacagatgcaaccgcagtgctttcactgcttcaaccggcacctgaaaccttcgagttatttgatgatcttatattgatggcagaggggaagatagtataccatggcccccgcagtcaagcactccaattttttaaggattgtggtttctggtgcccagaaagaaaaggagtggcagactttcttcaagagGTGATCTCTAAGAAGGATCAAAGGCAATACTGGTACCGCACAGATATTCCTTACAGATACATTTCAGTGGATGAGTTCTCTCAAATATTCAAATCAAGTTATTGGGGAAGAATGTTAAATGACGAGCTCTCACAGCCAGATGATAAATCTCAATCCCATAAAAATGCTTTATCGTTTAGCAAGTACTCATTGGGAAAATGGGATCTGTTTCAAGCTTGTATGAAGAGGGAGATTCTTCTCATGAAACGAAACTCGTTTATCTATGTATTTAAAACTGCACAGCTTACAATCACAGCAATCATAACAATGACAGTGTTCTTACGTACTCAGCTGGCTGTGGATTTGATAGGATCAAACTATTTATTGGGTTCATTGTACTATACACTTGTCCGCCTCATGACTAATGGCGTTGCAGAGTTGATCatgactattactagactccctgtagttgataagcagaaggcattctatctctatccagcttgggcttactgccttccggctgcgattctaaagattccgttttctgtacttgattctattgtttggacatcagttacatattatgttataggCTACAGCCCTGAAATAACAAGGCAATTTCTTTTGCTTGTCACTTTGCATATGTCATCAACCTCCATGTGCCGTTGCCTTGCTTCAGTTTTCAAAACTGATGTTGCAGCTACAACAGTTGGTTCCTTGGTCTTAGTACTGATGTTCTTGTTTGGTGGCTTTATTCTTCCTCGGCCATCACTACCATGGTGGTTGAGGTGGGGATTTTGGCTTTCCCCCATGTCATATGGGGAAATAGGAATAACATTAAATGAATTTCTTGGTCCTCGCTGGCAAAAGATCAAAGAGGGAAATATCACTGTAGGAAATGAGGTTCTCAGAAGTCATGGTTTAGACTTTGACAGTAACTTCTACTGGCTATCAGTTGGAGCTCTACTTGGTTTCACAATCCTATTTGATTTTGGATTTGTCTTGGCATTAACATACATAAAACAGCCTAAGATGTCTCGAGCTTTAGTCTCAAAGAAGAGGCTCACTCAACTAAGGGGACAAGAAAAAAGCAACAGTGTGGAACTGAGGTCAGTTACTGTTGATATTGGCCACACAACAAGGGAAAATCAAAACACAGGGAAAATGGTCCTGCCGTTTGAGCCACTGACGATAGCATTCAAGGATGTCCAATATTTTGTTGACATTCCTCCGgagatgaaaaaacatggttctgatgagaaaaggctacaattgctccgtgatatcacaggagcctttaggccaggaattctcactgcactgatgggggtgagtggggcagggaagactactctgatggatgttctttcaggaagaaaaactggaggtatcattgaaggagatataagaattggaggataccccaaagtgcaaaagacatttgcaagagtttcaggttactgtgagcagagtgacatacattctccatatataactgttgaagaatctgtcacatactcagcttggttgcggttgccaacagaaattgattcggtcacaaaagggaagtttgttgaagaagtccttgaaacaattgaacttgatgatataaaggattgtttagttggcatccctggccaaagtggcttatctaccgaacaacgtaaaagactaaccattgcagtggagcttgtttccaatccatcaataatatttatggatgaacctacatctggtttggatgctcgagcagctgccgttgttatgcgggcagtgaagaatgttgttgccactggcaggactacagtttgcactatacaccaaccgagcattgacatatttgagacttttgatgagttgattctaatgaaatctggaggacagattatttatagtggaatgctaggccatcattcaagtagactgattgattattttcagaatatacctggggtgccaaagatcaaggacaattataatcctgcaacctggatgttggaagctacctctgcatctgtagaagcagaacttcaagtagattttgcacagatatataaagagtcacacctttatagggatacccttgaattggtgagagagttaagtgaaccaccgccaggttcaagagacttgcacttttcaactcgcttcccgcaaaataacttggggcagttcatggcatgcctatggaagcaacacttgtcctattggagaagtcctgagtacaacttaacacgtttcattttcatggttgtttgtgcaataatatttggggcagtattttggCAGAAAGGGAATGAAATAAACAATCAGcaggatttgttcaacgtacttggatcaatgtatattgctgtaatattcttgggtctaaattactgttcaacaattctaccatatgtggctaccgagcgtgctgtcttgtatcgagaaaaatttgctggaatgtactcgtctacagcttactcatttgcacaggtggccattgaaataccatacattttagtgcaatcaattttatatgtgggtatcacatatccaatgataggtttcgaatggtcagttcagaaagtgttttggtacttctacaccactttctgtacatttttgtactttgtatatcttggaatgatgataatgtcattgagcgtaaatctcgatatagcttcggtattgtcaactgcagtctacaccatattcaatctcttttctggattcctcatgccaggaccgaaaattcctaaatggtgggtttggtgctactggatttgtcccactgcttggtccttgaatggcctcttaacttcacaatatggagacatggAGAAGGAGATACTCATATTTGGGGAGAAAAAACCAGTTGGTTCCTTTCTAAGAGATTACTATGGGTTTCGGCATGATAGATTAAGCCTTGTGGCTGGGGGCTTTCTAAGAGATTACTATGGGTTTCGGCATGATAGATTAAGCCTTGTGGCTGTGGTGCTCATTGCTTACCCACTTATTTACGCTTCTCTGTTTGCCTATTGCATTAGAAAAATGAATTACCAAAAGAGATAG 4341 0.1848 MELTPRGRNQGHVLTFDRDADSFVEEDKELQSKWAAIEKLPTFKRIKTSFVDVSQEESGSSSREADGKRVVDVTKLGAVEKRLFIDRLIKHIENDNLQLLQKLRERMERVNVKLPTVEVKYKNLHVAAECEVVQGKPLPTLWNSFSSSLSGFMKTISCNSQGAEISILNDVSGIIKPSRLTLLLGPPGCGKTTLLMALAGKLEQSLKVSGEISYNGYKLNEFVPQKTSAYISQYDLHVPEMTVRETIDFSARCQGVGGRADLVAEITRREKEEGIIPDPDIDTYMKAISVEGQSENLQTEYVLKILGLDICADILVGDALDRGISGGQKKRLTTGEMIVGPIKALFMDEISTGLDSSTTFQIVTCLQQLVHITDATAVLSLLQPAPETFELFDDLILMAEGKIVYHGPRSQALQFFKDCGFWCPERKGVADFLQEVISKKDQRQYWYRTDIPYRYISVDEFSQIFKSSYWGRMLNDELSQPDDKSQSHKNALSFSKYSLGKWDLFQACMKREILLMKRNSFIYVFKTAQLTITAIITMTVFLRTQLAVDLIGSNYLLGSLYYTLVRLMTNGVAELIMTITRLPVVDKQKAFYLYPAWAYCLPAAILKIPFSVLDSIVWTSVTYYVIGYSPEITRQFLLLVTLHMSSTSMCRCLASVFKTDVAATTVGSLVLVLMFLFGGFILPRPSLPWWLRWGFWLSPMSYGEIGITLNEFLGPRWQKIKEGNITVGNEVLRSHGLDFDSNFYWLSVGALLGFTILFDFGFVLALTYIKQPKMSRALVSKKRLTQLRGQEKSNSVELRSVTVDIGHTTRENQNTGKMVLPFEPLTIAFKDVQYFVDIPPEMKKHGSDEKRLQLLRDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQKTFARVSGYCEQSDIHSPYITVEESVTYSAWLRLPTEIDSVTKGKFVEEVLETIELDDIKDCLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAVVMRAVKNVVATGRTTVCTIHQPSIDIFETFDELILMKSGGQIIYSGMLGHHSSRLIDYFQNIPGVPKIKDNYNPATWMLEATSASVEAELQVDFAQIYKESHLYRDTLELVRELSEPPPGSRDLHFSTRFPQNNLGQFMACLWKQHLSYWRSPEYNLTRFIFMVVCAIIFGAVFWQKGNEINNQQDLFNVLGSMYIAVIFLGLNYCSTILPYVATERAVLYREKFAGMYSSTAYSFAQVAIEIPYILVQSILYVGITYPMIGFEWSVQKVFWYFYTTFCTFLYFVYLGMMIMSLSVNLDIASVLSTAVYTIFNLFSGFLMPGPKIPKWWVWCYWICPTAWSLNGLLTSQYGDMEKEILIFGEKKPVGSFLRDYYGFRHDRLSLVAGGFLRDYYGFRHDRLSLVAVVLIAYPLIYASLFAYCIRKMNYQKR 1446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02643 1446 Pfam ABC transporter 168 350 IPR003439 GO:0005524
Cca11g02643 1446 Gene3D - 841 1071 IPR027417 -
Cca11g02643 1446 Gene3D - 153 418 IPR027417 -
Cca11g02643 1446 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 2 1401 - -
Cca11g02643 1446 Pfam ABC transporter 855 1007 IPR003439 GO:0005524
Cca11g02643 1446 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 827 1080 IPR003439 GO:0005524
Cca11g02643 1446 SMART AAA_5 864 1056 IPR003593 -
Cca11g02643 1446 SMART AAA_5 177 409 IPR003593 -
Cca11g02643 1446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 425 IPR027417 -
Cca11g02643 1446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 852 1062 IPR027417 -
Cca11g02643 1446 Pfam ABC-2 type transporter 383 463 IPR043926 GO:0140359
Cca11g02643 1446 CDD ABCG_PDR_domain1 164 407 IPR034001 -
Cca11g02643 1446 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 153 425 IPR003439 GO:0005524
Cca11g02643 1446 Pfam Plant PDR ABC transporter associated 717 779 IPR013581 -
Cca11g02643 1446 Coils Coil 100 120 - -
Cca11g02643 1446 Pfam ABC-2 type transporter 504 712 IPR013525 GO:0016020|GO:0140359
Cca11g02643 1446 Pfam ABC-2 type transporter 1153 1365 IPR013525 GO:0016020|GO:0140359
Cca11g02643 1446 CDD ABCG_PDR_domain2 824 1062 IPR034003 -
Cca11g02643 1446 PANTHER ATP-BINDING CASSETTE TRANSPORTER 1402 1446 - -
Cca11g02643 1446 PANTHER ATP-BINDING CASSETTE TRANSPORTER 2 1401 - -
Cca11g02643 1446 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 1402 1446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02643 Cca-Chr11 53693750 53702388 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02643 852 1039 Calmodulin-binding Proteins AT2G36910 28.571 2.19e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02643 K08711 - gmx:100779615 2640.53