Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02640 ATGGAGGCACAATTTGGGGGGAAGAATCAGTACTTGTGTGGACCTGTGGTGTCAGGGATGAAGAAAGCTGTtgggaaggggaaggggagtttggagtgggatttgaatgattggaaatgggatggTGATCTTTTCACTGCTCAACAACTCAATTCAGTGCCATCAGATTGTAGTAGTCGCCAGTTTTTCCCACCTCATCCTGAAATTTCTGCAAAAAATGCTAATCCATCTTCCAATTTGTCTTCTTCTCTATTCAACTCaggtgaagggaagagggaattggagaaaaggagaaggggtgttataggggaaggtgaagaggagaggCTAAATGATGAGGGTGGTTCCCTTAGTTTGAACCTTGGGGGTCAAGGTTACCCTCTAATAGTGGAAGGAGAGGAAAAAAGTGGAAAGAAGACAAAGGTAATTGGGACTACTATTGCTGCTGCTACTTCTACCTCTAACCGTGCTGTTTGTCAGGTGCAAGATTGTAGGGCTGATCTTAGTAATGCCAAGGATTACCACCGTCGGCATAAGGTTTGTGGTGTTCACTCGAAGGCCACTATGGCACTAGTGGGAAATGTTATGCAACGTTTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGAAGGCGTTTGGCCGGCCACAACAGGAGGAGGAGGAAAACTCATCCCGATGTTACTGTTATTAATGAAGGATCACTTAATGATGAAAGGGGCAGTAGCTATCTGTTGATGAGTCTGTTACGGATACTGACCAATTTGCATTCAAATGGCTCAGATCATACAAAGAACCAGGATATTCTTTCTCATCTACTAAGGAACCTGGCAAGTCTGGCTGGTCCAATTAATGGTAGAAGTTTAGCATCCTTATTGGAGGAATCTAAAGGTTTGGTAAATGCCGGGACACCTGGAGCTGCTCATGATAAACCCAACCTTATTTCAAATGGTCTTAATTCCAGGCCGTCTGGTTCTTCCATCAAGACAGATAATGGCATCATCATTCAGGACCCTCCAATGTCTGTGGCACAGTGTGAAACAGTGCCTGCTAATGGTAGGACACAAAAATGTATACCTTCAGGTGATGGTGGAGTGGGAATTTTAAAACCTCCTTCAGGACTACGGCAGGACAACCTTCCATCCCAATTAACTGCAGCAGAGACTACAGTTGGAAAGGGCACTTTAATTAACTTTGACCTGAATAATGTGTACAATGATATACAGAGTACTGTTGAGACTCATAAGAAGCCTTATCCTTGTGTGGCTTCAGAGATGGGGTCTATTGGTCATCCCTCATGGTTGCAATGTGATTCTCTCAAATCGAGTCCTCCACAGACAAGTGGAAACTCAGATTCAACCTCTACCCAATCACCATCTAGTTCCAGTGGAGAAGCTCAGAGTCGCACGGATCGAATTGTTTTTAAACTCTTTGGTAAGGATCCAAATGATTTTCCCCTTCTTCTCCGGTCACAGATCCTCAACTGGTTATCCCACAGCCCTACAGAGATAGAGAGCTACATAAGGCCAGGCTGTATCATATTAACAATATATCTCCGTCTTGAAAAATCTGCATGGGAGGAGCTCTACTGTAATCTAGGAGCAAGCTTGAGAAAGCTTCTTGCTGCATCAAATGATTCATTTTGGACAACAGGATGGATATATGCAAGGGTGCAGCACACTGTAGCTTTTCTGTATAACGGTCAGGTAGTCTTAGATGTGCCCCTGCGTCTCAAAAGCCCGCAACATTGTAGGATTTCTTGCATTAAACCACTTGCTGTTCCTGCAAGTGCTAGTGCTCAATTTATTGTGAAAGGTTTCAACCTTTCCCAGTCTAGCACAAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGATACATGCTAATTGTCATGATTTGATTGATGGAGCTGATGCGCCCATTCAGCATCTCAGCTTTTCTTGTCATATACCAAGTATAACTGGGAGGGGGTTTATTGAGGTGGTGGAAGACCACGGTCTTAGCAGTTGTTCATTTCCATTTATAGTTGCAGAACAAGAAGTTTGTGCAGAGATCTGCAAGTTGGAGAATGTGATAGAGTCAGCTGAAACCACTGATGACATCCAGATAAAAAACCAACAAATTGAAGAAAAGACTAGAGCTTTGGATTTCTTACAAGAAATGGGTTGGCTCCTTCATAGAAGTCATGTGAAAGTTAGGCTAGGTACCATGGCTCCTATCCATGATCTCTTCCCATTCAAACGGTTCATGTGGCTCATTGATTTTTCCATGGACCATGGTTGGTGTGCTGTGATGAAAAAGCTCTTGGACATTGTATCTGGGGGTGGTGTTGATGCAGGAGAGCATGCTTCCGTTGAGCTTGCATTGTTGGAGATGAGTCTTCTACACAGAGCTGTAAAGAGAAACTGTAGGCCTATGGTAGAACTACTGTTAAGATTTGTGCCAGTTAAAACCTCAGATGGTGCAGACAGTGAAGTGAAGCAAGTTGACAAGGTCCCTGACAGATTCTTATTTAGACCTGATGCTGTTGGGCCAGCTGGGTTGACTCCTCTTCATGTTGCAGCAAGTATGAGTGGCTCCGAGAATGTGTTGGATGCATTAACTGATGATCCACGAATGGTAGGAATTGAAGCATGGGAAAGTGCCCGGGACAGTACCGGTTCGACCCCCATAGACTATGCACGCCTTCGGGGCCATTACTCATACATTCAACTTGTCCAAAATAAGACCAACAAAAAAGATGAAAGACAACATGTGGTTGACATCCCTGGAACTGTTGTGGATAGTAACTCAAAGCAGAAACAAACAGAAGGGCACAGGAGATGTAAAGTTTCAAGTTTACAGACTGAGAAGATTGAAACCACAGCAATGACACAACAATGTAGGGTATGCCAGCACAAGGTGGCTTATGGTGGCATGAGAATAGCAGTGGTTTATAGGCCAGTGATGCTCTCCATGGTGGCCATAGCAGCTGTGTGTGTCTGTGTGGCATTGCTCTTCAAAAGCTCACCTAGAGTTTACTATGTGTTCCAGCCCTTCAACTGGGAGTCATTGGAGTATGGGGCAATATAA 3099 0.4227 MEAQFGGKNQYLCGPVVSGMKKAVGKGKGSLEWDLNDWKWDGDLFTAQQLNSVPSDCSSRQFFPPHPEISAKNANPSSNLSSSLFNSGEGKRELEKRRRGVIGEGEEERLNDEGGSLSLNLGGQGYPLIVEGEEKSGKKTKVIGTTIAAATSTSNRAVCQVQDCRADLSNAKDYHRRHKVCGVHSKATMALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPDVTVINEGSLNDERGSSYLLMSLLRILTNLHSNGSDHTKNQDILSHLLRNLASLAGPINGRSLASLLEESKGLVNAGTPGAAHDKPNLISNGLNSRPSGSSIKTDNGIIIQDPPMSVAQCETVPANGRTQKCIPSGDGGVGILKPPSGLRQDNLPSQLTAAETTVGKGTLINFDLNNVYNDIQSTVETHKKPYPCVASEMGSIGHPSWLQCDSLKSSPPQTSGNSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKDPNDFPLLLRSQILNWLSHSPTEIESYIRPGCIILTIYLRLEKSAWEELYCNLGASLRKLLAASNDSFWTTGWIYARVQHTVAFLYNGQVVLDVPLRLKSPQHCRISCIKPLAVPASASAQFIVKGFNLSQSSTRLLCALEGKYLIHANCHDLIDGADAPIQHLSFSCHIPSITGRGFIEVVEDHGLSSCSFPFIVAEQEVCAEICKLENVIESAETTDDIQIKNQQIEEKTRALDFLQEMGWLLHRSHVKVRLGTMAPIHDLFPFKRFMWLIDFSMDHGWCAVMKKLLDIVSGGGVDAGEHASVELALLEMSLLHRAVKRNCRPMVELLLRFVPVKTSDGADSEVKQVDKVPDRFLFRPDAVGPAGLTPLHVAASMSGSENVLDALTDDPRMVGIEAWESARDSTGSTPIDYARLRGHYSYIQLVQNKTNKKDERQHVVDIPGTVVDSNSKQKQTEGHRRCKVSSLQTEKIETTAMTQQCRVCQHKVAYGGMRIAVVYRPVMLSMVAIAAVCVCVALLFKSSPRVYYVFQPFNWESLEYGAI 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02640 1032 Gene3D - 768 937 IPR036770 -
Cca11g02640 1032 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 1031 IPR044817 GO:0003677
Cca11g02640 1032 MobiDBLite consensus disorder prediction 89 113 - -
Cca11g02640 1032 SUPERFAMILY SBT domain 157 238 IPR036893 GO:0003677|GO:0005634
Cca11g02640 1032 ProSiteProfiles Zinc finger SBP-type profile. 156 233 IPR004333 GO:0003677
Cca11g02640 1032 Pfam SBP domain 159 232 IPR004333 GO:0003677
Cca11g02640 1032 SMART ANK_2a 855 885 IPR002110 GO:0005515
Cca11g02640 1032 SMART ANK_2a 895 924 IPR002110 GO:0005515
Cca11g02640 1032 SMART ANK_2a 799 828 IPR002110 GO:0005515
Cca11g02640 1032 Gene3D - 149 220 IPR036893 GO:0003677|GO:0005634
Cca11g02640 1032 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 20 1031 - -
Cca11g02640 1032 MobiDBLite consensus disorder prediction 448 477 - -
Cca11g02640 1032 SUPERFAMILY Ankyrin repeat 800 917 IPR036770 -
Cca11g02640 1032 Coils Coil 710 730 - -
Cca11g02640 1032 MobiDBLite consensus disorder prediction 71 88 - -
Cca11g02640 1032 MobiDBLite consensus disorder prediction 56 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02640 Cca-Chr11 53664737 53671172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02640 183 1031 SBP-box Gene Family AT2G47070 49.942 0.0 738
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Cca11g02640 SBP 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02640 - - gsj:114419913 1703.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02640 11 53664737 53671172 Cca11g02640 11 53664737 53671172 ECH
Cca11g02640 11 53664737 53671172 Cca08g01284 08 38530295 38542552 PCT