Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02639 ATGGCTTGTTTTGGCTTCTGCAAAGGAAATGATAGTATTGCAATTGCTGAAAGAGGATCTTACATGCAAAGCGCCCCCATTGGGAACCCCAGTCATCATGGCAGACACACACCAGTACCCACTCCCCGGCCTGTAACTTTTCAACCTATTGCTGTCCCTTCCATTACAGTAGATGAATTGAAGTCTTTGACAGATAATTTTGCTACGAAATATTTCATTGGTGAGGGTGCATATGGGAAAGTATATCATGCCACATTGAAAAATGGGCGTGCAGTGGTAATAAAAAAGTTAGACTCCAGCAATCAGCCAGAACAAGAATTTCTTTCTCAGGTCTCCATCGTATCAAGGCTAAAGCATGAAAACGTTGTTGAGCTTGTTAACTATTGTGTTGATGGTCCTTTCCGCGCCCTTTCCTATGAGTATGCTCCTAGAGGATCCCTTCATGATATTCTACATGGACGCAAAGGTGTGAAGGGTGCACAACCTGGTCCAGTTTTGTCATGGGCTCAGAGAGTTAAAATTGCTGTGGGAGCAGCCAAGGGACTTGAATATCTTCATGAAAAGGCAGAGATTCATATCATCCATCGCTACATTAAGTCTAGTAACATACTTCTTTTTGATGATGATGTTGCAAAGATTGCTGATTTTGATTTGTCAAATCAAGCCCCTGATGCAGCGGCACGTCTTCATTCTACTCGTGTTCTTGGGACCTTTGGTTATCATGCTCCAGAATATGCAATGACCGGACAACTCACTTCAAAAAGTGATGTTTATAGCTTTGGAGTTATACTGCTGGAACTCTTAACCGGGCGAAAACCCGTTGATCATACGCTGCCCCGAGGACAGCAAAGCCTTGTGACCTGGGCAACACCAAAGCTTAGTGAAGATAAGGTGAAGCAGTGTGTTGATGTTAGATTAAAGGGAGAGTACCCTTCAAAGTCAGTTGCAAAGATGGCTGCTGTTGCTGCATTGTGTGTGCAATATGAAGCTGAGTTTCGGCCAAATATGAGTATTATAGTAAAAGCTCTGCAGCCTCTCCATGCTCGTTCTGTTCACCCAAAGGATTCCCCCACCATGTAA 1080 0.437 MACFGFCKGNDSIAIAERGSYMQSAPIGNPSHHGRHTPVPTPRPVTFQPIAVPSITVDELKSLTDNFATKYFIGEGAYGKVYHATLKNGRAVVIKKLDSSNQPEQEFLSQVSIVSRLKHENVVELVNYCVDGPFRALSYEYAPRGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAAKGLEYLHEKAEIHIIHRYIKSSNILLFDDDVAKIADFDLSNQAPDAAARLHSTRVLGTFGYHAPEYAMTGQLTSKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVKQCVDVRLKGEYPSKSVAKMAAVAALCVQYEAEFRPNMSIIVKALQPLHARSVHPKDSPTM 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02639 359 Pfam Protein tyrosine and serine/threonine kinase 72 343 IPR001245 GO:0004672|GO:0006468
Cca11g02639 359 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 353 - -
Cca11g02639 359 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Cca11g02639 359 ProSiteProfiles Protein kinase domain profile. 67 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02639 359 CDD STKc_IRAK 73 346 - -
Cca11g02639 359 PIRSF ILK 9 355 - -
Cca11g02639 359 Gene3D Phosphorylase Kinase; domain 1 40 141 - -
Cca11g02639 359 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 353 - -
Cca11g02639 359 SUPERFAMILY Protein kinase-like (PK-like) 41 343 IPR011009 -
Cca11g02639 359 Gene3D Transferase(Phosphotransferase) domain 1 143 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02639 Cca-Chr11 53639911 53644012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02639 49 344 Receptor kinase-like Gene Family AT4G02010 48.333 2.33e-86 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Cca11g02639 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02639 K13436 - gmx:547596 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02639 11 53639911 53644012 Cca11g02639 11 53639911 53644012 ECH