Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02637 atggcgtctgaTCTAAGTTCGGGGTTGTCCAAACAAACGTCTGTTTTTGGGTTGAAAGCATGGGAATTAATGGGGATAATAGTTGGGTTGTTCATTATAATCATTCTTGTGGTGATATCAATATGTCTTACTTCAAGAAAGAAATCTAGAAGAGTCAATGGCATGCTTCCCCTCAGCCATATGTTATCTGTTTCCGAAGAGATCAAGGAAATTAGAGTTGATCAGGTCTCATCCAATAATCATCCTCAGAATGGAGCTTTTATGAGTTTGTATGACAGGTTTAGCGATAAGGACTCTGAAAAGGTTTTGATCCATGCAAAGAATGGGGAAAATAGCAGTCAATCAGGCTCATTTGTTCATCTTAAGAAAGATGATGGCTCTCAATCAGGTGAAGAAAGTGGTGCTAAGTCTGTTTCCACTTACAGGTCTTCTTCGCATCCTATAACTGCGCCATCCCCCTTGTCTGGTCTACCTGAATTCTCTCACCTTGGTTGGGGACACTGGTTTACATTAAGGGACCTAGAACTTGCAACAAACAGGTTTTCAAAAAGCAATGTTATTGGTGAAGGTGGATATGGAGTTGTTTATCAAGGCCAGCTAATCAATGGGAGTCCTGTGGCTGTTAAGAAGCTACTCAATAATCTAGGACAAGCTGAAAAGGAATTTAGAGTGGAAGTTGAGGCTATTGGTCATGTGCGGCACAAGAACTTGGTTAGACTTTTGGGCTATTGCATTGAAGGCACTCACAGGTTGTTGGTTTACGAGTATGTTAACAATGGAAATTTAGAGCAATGGCTTCATGGAGCTATGCGGCAGTATGGTTTTCTTACTTGGGATGCTCGGATTAAAATTCTTCTTGGAACAGCTAAAGCGCTGGCTTACTTGCATGAGGCAATTGAGCCAAAAGTTGTACATAGAGATATTAAGTCGAGCAATATTCTAATTGATGATGACTTCAATGCCAAAATATCTGACTTTGGTCTGGCTAAGTTACTAGGTGCTGGAAAAAGTCACATCACAACTCGAGTAATGGGTACTTTCGGATATGTGGCTCCAGAATATGCAAACTCTGGATTACTAAACGAGAAAAGTGATGTTTATAGCTTTGGAGTATTGCTCCTTGAAGCAATTACCGGAAGAGACCCAGTGGATTATAGCCGACCTGCAGCTGAGGTAAATTTGGTCGACTGGCTCAAGATGATGGTTGGGAATAGGCGTGCAGAAGAGGTGGTGGACCCTAACATTGAGACCAGGCCATCAACAAGTGCCCTTAAACGTGCACTTTTGACTGCTTTGAGGTGTGTTGATCCAGATTCTGAGAAAAGACCAAAGATGAGTCAAGTTGTCCGCATGCTTGAATCAGAGGAATATCCCATACCCCGAGAGGATCGAAGACGCCGAAAGAGTCAGGCAGGGAATATGGAGCTGGAGAGCCAGAAGGAGACTTCTGATACAGAAAAGAGTGACAATCCAGACTCTAAGTCCAATGGCAGAAGGAACCAAAGGAAGTAG 1512 0.422 MASDLSSGLSKQTSVFGLKAWELMGIIVGLFIIIILVVISICLTSRKKSRRVNGMLPLSHMLSVSEEIKEIRVDQVSSNNHPQNGAFMSLYDRFSDKDSEKVLIHAKNGENSSQSGSFVHLKKDDGSQSGEESGAKSVSTYRSSSHPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKSNVIGEGGYGVVYQGQLINGSPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLVYEYVNNGNLEQWLHGAMRQYGFLTWDARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYSRPAAEVNLVDWLKMMVGNRRAEEVVDPNIETRPSTSALKRALLTALRCVDPDSEKRPKMSQVVRMLESEEYPIPREDRRRRKSQAGNMELESQKETSDTEKSDNPDSKSNGRRNQRK 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02637 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672|GO:0006468
Cca11g02637 503 MobiDBLite consensus disorder prediction 131 148 - -
Cca11g02637 503 MobiDBLite consensus disorder prediction 452 503 - -
Cca11g02637 503 PANTHER RECEPTOR-LIKE KINASE PLANT 2 503 - -
Cca11g02637 503 Gene3D Transferase(Phosphotransferase) domain 1 257 469 - -
Cca11g02637 503 Gene3D Phosphorylase Kinase; domain 1 163 256 - -
Cca11g02637 503 SMART serkin_6 181 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02637 503 SUPERFAMILY Protein kinase-like (PK-like) 165 462 IPR011009 -
Cca11g02637 503 CDD STKc_IRAK 187 453 - -
Cca11g02637 503 ProSiteProfiles Protein kinase domain profile. 181 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02637 503 ProSitePatterns Protein kinases ATP-binding region signature. 187 210 IPR017441 GO:0005524
Cca11g02637 503 PANTHER OS01G0323000 PROTEIN 2 503 - -
Cca11g02637 503 MobiDBLite consensus disorder prediction 110 148 - -
Cca11g02637 503 Pfam Protein kinase domain 182 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02637 Cca-Chr11 53630600 53635637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02637 17 455 Trihelix Transcription Factor Family AT1G70460 40.312 8.57e-96 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Cca11g02637 Pkinase 8.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02637 - - gmx:100793499 942.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02637 11 53630600 53635637 Cca11g02637 11 53630600 53635637 ECH
Cca11g02637 11 53630600 53635637 Cca08g01287 08 38770820 38775868 PCT