Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02631 aTGGTGATTATAAACCTTGGGAAGTATGAGTTGGGTAGGACTCTTGGTGAAGGCAATTTCGGCAAAGTTAAGTTCGCCAGGAACACTGATTCTGGACAACCTTTTGCTGTTAAGATCATCGACAAGAACAAGATCCTCCAACTCAACATCACCAATCAGATAAAGAGGGAGATAGGGACCTTAAAGCTCCTCAAGCATCCGAATGTTGTTAGATTATATGAGGTCTTGGCTAGCAAAACAAAAATTTATATGGTACTTGAGTACGTCAATGGAGGAGAGTTATTCAACAAAATTgcatccaaaggtaaactcacagaaggtgaaagcagaaagttgttccaacagttgattgatggggtgagctactgccacagtaaaggtgtcttccacagagatctcaagcttgagaatgtactagtggataacaacgggagcctaaaaataactgattttggccttagtgctttacctcagcatcttaggGGAGATGAATTGCTGCATACAACTTGTGGAAGTCCAAATTATGTTGCACCAGAGGTTCTTGCTAATAAGGGCTATAACGGTGCAACATCAGATGCATGGTCATGTGGTGTTATATTGTTTGTAATCCTAACAGGATACCTACCATTTGATGATAGAAACCTTGTAGTTCTCTATCAGAAGATTTTTAAAGGAGATGTTCAGATACCAAAATGGCTTTCACCTGGTGCACAAAACATGTTACAGAGGATTCTTGATCCCAACCCCGAAACACGGATAACGATGGCTGGGATCAAAGAAGATCCATGGTTCAAGCAGGGCTATGTTCCTGCAAATCCTGAGGATGAGGATGTATATGTTGATAATGAAGCCTTTTCCACCCATGAAGAGCCAAACGAAGCAGAACAGAGGAATTCAGGATCACCAACCCTTATCAATGCATTTCAGTTGATAGGGATGTCTTCATGCCTGGACCTCTCTGGCTTTTTTGAGAAAGAGGATGTCTCTGAGAGAAAGATAAGATTTACATCAAACCTTTCGGTTAAAGATCTGACTGAGAAAATTGAGGACACTGTGACAGAAATGGAATTTAGAGTCCAGAAGAAAAATGGCAAATTGAAAGTGATACAAGAGAATAAGGAGCACAAAACACTTGGCTGCCTCTCAGTGGCAATAGAGGTGTTTGAAATAAGCACATCATTGTATGTAGTAGAATTAAGGAAGTCTTATGGAGATGGTTCTGCATATAAGAAGTTATGCAAGAGATTATTGAAGGATTTGGGTGTTCCACCATGCAAGCACTAG 1284 0.3427 MVIINLGKYELGRTLGEGNFGKVKFARNTDSGQPFAVKIIDKNKILQLNITNQIKREIGTLKLLKHPNVVRLYEVLASKTKIYMVLEYVNGGELFNKIASKGKLTEGESRKLFQQLIDGVSYCHSKGVFHRDLKLENVLVDNNGSLKITDFGLSALPQHLRGDELLHTTCGSPNYVAPEVLANKGYNGATSDAWSCGVILFVILTGYLPFDDRNLVVLYQKIFKGDVQIPKWLSPGAQNMLQRILDPNPETRITMAGIKEDPWFKQGYVPANPEDEDVYVDNEAFSTHEEPNEAEQRNSGSPTLINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTSNLSVKDLTEKIEDTVTEMEFRVQKKNGKLKVIQENKEHKTLGCLSVAIEVFEISTSLYVVELRKSYGDGSAYKKLCKRLLKDLGVPPCKH 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02631 427 ProSiteProfiles Protein kinase domain profile. 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02631 427 Gene3D Phosphorylase Kinase; domain 1 3 88 - -
Cca11g02631 427 Gene3D Kinase associated domain 1, KA1 300 421 - -
Cca11g02631 427 PANTHER SERINE/THREONINE KINASE 5 426 - -
Cca11g02631 427 Pfam Protein kinase domain 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02631 427 ProSiteProfiles NAF domain profile. 300 324 IPR018451 GO:0007165
Cca11g02631 427 SMART serkin_6 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02631 427 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Cca11g02631 427 Gene3D Transferase(Phosphotransferase) domain 1 89 269 - -
Cca11g02631 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Cca11g02631 427 SUPERFAMILY Protein kinase-like (PK-like) 6 274 IPR011009 -
Cca11g02631 427 Pfam NAF domain 302 361 IPR004041 GO:0007165
Cca11g02631 427 CDD CIPK_C 306 420 - -
Cca11g02631 427 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 5 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02631 Cca-Chr11 53587426 53591959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02631 72 421 CBL-interacting serine-threonine protein kinases AT3G17510 69.405 8.01e-171 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Cca11g02631 Pkinase 9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02631 K07198 - gmx:100777468 768.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02631 11 53587426 53591959 Cca11g02631 11 53587426 53591959 ECH
Cca11g02631 11 53587426 53591959 Cca08g01294 08 38906485 38912200 PCT