Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02626 ATGGAAGGGGATATCAGTGTGAACGGAGATCCTAACAACAATCAAGACTCAAAGAAGAGCGAGACCAAAGATGAACCCTCCCAAACAGTACCCTTGTACAAGCTTTTCTCATTTGCTGATCCTTTGGATCACTTGTTGATGTTTGTAGGGACTGTTGGTGCTATTGGGAACGGAATCTCCATGCCCTTGATGACTTTGATATTTGGAAATATGATCAATGCATTTGGAGAATCCAGTAACACCGAAGAAGTTGTTGATGAAGTTTCCAAGGTGTCTCTGAAATTCGTATACTTGGCTGTGGGTACCTTTTTTGCATCACTTTTGCAGTTGACAGGCTGGATGATCACTGGTGAGAGACAAGCTGCAAGAATTAGAGGCTTGTACCTTCAAACAATTTTGAGGCAAGATGTTAGCTTCTTTGATAAAGAGACTAATACTGGAGAGGTTGTTGGAAGGATGTCAGGTGATACTTTTCTTATTCAAGACGCCATGGGTGAGAAGGTGGGACAGTTCATTCAGTTAATAGCAACTTTCATTGGAGGTTTTGTCATAGCATTCATCAAGGGATGGCTTCTAACTGTTGTCATGATGTCTTGTATTCCACTTCTTGTCTTGTCTGGGGCAATGATGAGCCTCATTATTACAAAAGCATCATCAAAAGGACAAGCTGCTTATTCTACAGCAGCAAGTGTAGTAGAGCAGACAATTGGTTCCATACGAACTGTTGCATCATTCACTGGGGAGAGGCTAGCAATATCTAAATACAACCAGTCCTTGATCAAGGCCTACAAGACTGGAGTGCAAGAAGCACTGGCTTCTGGTTTGGGTTTTGGTGCACTCTATTTTGTAGTTATCTGCAGTTATGGTTTGGCTGTTTGGTTTGGTGCAAAAATGATTATAGAGAAAGGATATTCAGGGGGAGAGGTTGTGACTGTAATATTTGCTGTATTGACTGGCTCCATGTCTCTTGGGCAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATCAAAAGGAAGCCAGAAATTGATGCTTATGACACTACTGGTAGGAAGCTTGATGACATTCGCGGTGACATAGAGCTTAGGGAGGTTTGCTTTAGTTATCCTACACGGCCTGATGAACTGATATTCAATGGATTTTCTCTTTCAATACCAAGTGGCACTACTGCAGCTTTGGTAGGACAAAGTGGGAGTGGGAAGTCCACAGTTGTTAGTTTGATAGAAAGGTTTTATGATCCACAGTCTGGTGAAGTACTCATTGATGGTATCAACCTCAGAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTCAGCCAGGAGCCAGTCCTCTTTACTTGTACCATTAAAGAGAATATTGCCTATGGCAAGGATGGGGCAACAGATGAAGAAATCAGAGCTGCAGCAGAACTAGCTAATGCTGCAAAATTTATAGATAAACTTCCTCAGGGACTAGACACAATGGTTGGTGAGCATGGTACTCAGCTCTCTGGGGGTCAAAAGCAGAGAGTAGCAATAGCAAGAGCCATTTTGAAAGATCCAAGAGTCCTACTTCTGGATGAAGCTACAAGTGCCCTTGATGCTGAATCTGAGAGAATTGTGCAAGAGGCATTGGACAGAATAATGATAAACCGAACAACTGTCATTGTAGCCCACCGCTTAAGTACTATAAGAAACGCAGATACAATTGCTGTTATTCATCAAGGAAAAATAGTTGAAAGAGGTTCACATGCTGAGCTCACCAAGGATCCTGATGGAGCCTATAGCCAACTCATCAGACTGCAAGAAATCAAGAAGTTAGAACAGAATGTAGATGGCAGAGACAAAACAGATAGTATAGGGCATTCTGGAAGACATTCAAGTCAAAGGTCTTCTTTCTTACGATCTATAAGCCAACAATCATTGGGAATTGGAAATAGTGGTCGTCATTCATTGTCAGCATCATTTGGTGTGCCCACAACAGTTGGCTTCATTGAACCTACAGGCGAAAAGCCTCAAGATTCTCCCTCAACAGATCCTTCACCACCAGAAGTGTCTCTTTATCGCCTGGCTTATCTAAACAAGCCAGAGATTCCAGTGTTATTGATGGGGACTATAGCTGCAGTGATAAGTGGAGTAATATTACCTGTTTTTGGGCTATTGCTTTCCAAAATGATTAGTATTTTCTATGAGCCACATCATGAACTTCGAAAAGATTCAAAAGTTTGGGCAGTAGTATTTGTTGGGCTTGGTGTGTTATCATTCCTGGTTTACCCAGCTAGATTCTACTTTTTTGGTGTTGCTGGTGGTAAGTTGATCAAAAGGATCCGGGAAATGTGTTTTGAGAAAGTAGTTCACATGGAAGTAAGTTGGTTCGATGAATCTGACCATTCAAGTGGAGCAATTGGAGCAAGGCTCTCTACTGATGCAGCTTCTGTTCGAGCTTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAAATATTGCCACAGCAGTAGCTGGCTTAGTAATTGCCTTTGAATCGAGCTGGCAGCTTGCCCTAATAATCCTTGCTTTGGTGCCTCTACTAGGATTAAATGGATATGTGCAATTCAAGTTCTTGAAAGGATTTAGTGCAGATTCAAAGAAATTGTATGAGGAAGCAAGTCAGGTGGCAAATGATGCTGTGGGGAGTATAAGAACGGTTGCTTCTTTCTGTGCTGAAGAGAAGGTGATGGAATTATACCAGGGAAAATGTGAAGGACCAATTAAGACAGGAATAAGGCGAGGGTTAATAAGTGGAATTAGTTTTGGGCTATCATTCTTCGTGCTGTATGCAGTTTATGCAACCAGTTTTTATGCTGGAGCTCGACTGGTCGAGGATGGCAAATCATCATTCTCAGATGTTTTCCGGGTCTTCTTTGCTCTCAGTATGGCAGCTATAGGAATCTCTCAATCTGGTTCTTTGGTCCCTGATTCAACTAAAGCAAAAAGTGCTGCGGCTTCCATATTTGCTATTATTGACCGAAAGTCACAAATAGACCCCAGTGATGACTCTGGAATGACACTGGGAGAAGAAGTCAAGGGAGAGATTGAACTTAAGCATGTCAGTTTCAAGTATCCTACCAGACCCGATGTTCAAATATTCAGAGATCTCAGCTTGACCATTCATAGTGGCAAGACAGTTGCATTGGTTGGAGAAAGTGGAAGTGGAAAATCAACGGTGATCTCATTATTACAAAGATTTTATGACCCGGACTCAGGTCACATTACACTGGATGGAAAAGAACTCCAAAGTATGCAAGTTAAATGGCTAAGACAACAAATGGGCCTGGTGAGCCAAGAGCCTGTGCTTTTTAATGACACCATCAGAGCCAATATTGCATATGGAAAAGGAGATGCAACTGAGGCAGAAATTATAGCTGCAGCAGAATTGGCAAACGCCCACAAGTTCATTAGTAGTTTGCAAAAGGGTTATGACACGTTAGTAGGGGAGCGAGGAGTTCAACTATCTGGAGGGCAGAAGCAAAGGGTGGCAATTGCAAGAGCTATAGTGAAGAATCCAAAAATATTACTACTGGATGAAGCCACAAGTGCACTTGATGCCGAATCTGAGAAAGTGGTTCAGGATGCACTAGACCGTGTTATGGTGGACCGAACCACAATTGTAGTGGCTCATAGGTTATCCACTATTAAGGGTGCGGATTTGATTGCAGTAGTTAAAAACGGGGTCATAGCAGAGAAGGGAAAGCATGAAACATTACTCAATAAGGGTGGTGACTATGCTTCCTTGGTAGCATTGCACACAAGTGCTTCCACATCATAG 3822 0.4239 MEGDISVNGDPNNNQDSKKSETKDEPSQTVPLYKLFSFADPLDHLLMFVGTVGAIGNGISMPLMTLIFGNMINAFGESSNTEEVVDEVSKVSLKFVYLAVGTFFASLLQLTGWMITGERQAARIRGLYLQTILRQDVSFFDKETNTGEVVGRMSGDTFLIQDAMGEKVGQFIQLIATFIGGFVIAFIKGWLLTVVMMSCIPLLVLSGAMMSLIITKASSKGQAAYSTAASVVEQTIGSIRTVASFTGERLAISKYNQSLIKAYKTGVQEALASGLGFGALYFVVICSYGLAVWFGAKMIIEKGYSGGEVVTVIFAVLTGSMSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGRKLDDIRGDIELREVCFSYPTRPDELIFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPQSGEVLIDGINLREFQLKWIRQKIGLVSQEPVLFTCTIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRVLLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHQGKIVERGSHAELTKDPDGAYSQLIRLQEIKKLEQNVDGRDKTDSIGHSGRHSSQRSSFLRSISQQSLGIGNSGRHSLSASFGVPTTVGFIEPTGEKPQDSPSTDPSPPEVSLYRLAYLNKPEIPVLLMGTIAAVISGVILPVFGLLLSKMISIFYEPHHELRKDSKVWAVVFVGLGVLSFLVYPARFYFFGVAGGKLIKRIREMCFEKVVHMEVSWFDESDHSSGAIGARLSTDAASVRALVGDALGLLVQNIATAVAGLVIAFESSWQLALIILALVPLLGLNGYVQFKFLKGFSADSKKLYEEASQVANDAVGSIRTVASFCAEEKVMELYQGKCEGPIKTGIRRGLISGISFGLSFFVLYAVYATSFYAGARLVEDGKSSFSDVFRVFFALSMAAIGISQSGSLVPDSTKAKSAAASIFAIIDRKSQIDPSDDSGMTLGEEVKGEIELKHVSFKYPTRPDVQIFRDLSLTIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGKELQSMQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGDATEAEIIAAAELANAHKFISSLQKGYDTLVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHETLLNKGGDYASLVALHTSASTS 1273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02626 1273 PANTHER - 9 1269 - -
Cca11g02626 1273 SMART AAA_5 1057 1249 IPR003593 -
Cca11g02626 1273 SMART AAA_5 397 583 IPR003593 -
Cca11g02626 1273 Pfam ABC transporter transmembrane region 47 321 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g02626 1273 Pfam ABC transporter transmembrane region 707 977 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g02626 1273 Gene3D - 368 633 IPR027417 -
Cca11g02626 1273 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 9 1269 - -
Cca11g02626 1273 Pfam ABC transporter 1049 1197 IPR003439 GO:0005524
Cca11g02626 1273 Pfam ABC transporter 389 537 IPR003439 GO:0005524
Cca11g02626 1273 SUPERFAMILY ABC transporter transmembrane region 695 1013 IPR036640 GO:0005524|GO:0016021
Cca11g02626 1273 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 708 994 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g02626 1273 CDD ABC_6TM_Pgp_ABCB1_D2_like 697 1012 - -
Cca11g02626 1273 CDD ABC_MTABC3_MDL1_MDL2 370 608 - -
Cca11g02626 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1022 1266 IPR027417 -
Cca11g02626 1273 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 335 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g02626 1273 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 331 - -
Cca11g02626 1273 Gene3D ABC transporter type 1, transmembrane domain 93 999 IPR036640 GO:0005524|GO:0016021
Cca11g02626 1273 SUPERFAMILY ABC transporter transmembrane region 34 354 IPR036640 GO:0005524|GO:0016021
Cca11g02626 1273 MobiDBLite consensus disorder prediction 1 26 - -
Cca11g02626 1273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1030 1266 IPR003439 GO:0005524
Cca11g02626 1273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 370 606 IPR003439 GO:0005524
Cca11g02626 1273 Gene3D - 1021 1272 IPR027417 -
Cca11g02626 1273 ProSitePatterns ABC transporters family signature. 1169 1183 IPR017871 GO:0005524
Cca11g02626 1273 CDD ABC_MTABC3_MDL1_MDL2 1030 1264 - -
Cca11g02626 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 608 IPR027417 -
Cca11g02626 1273 MobiDBLite consensus disorder prediction 616 638 - -
Cca11g02626 1273 ProSitePatterns ABC transporters family signature. 509 523 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02626 Cca-Chr11 53542585 53548262 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02626 15 1267 Calmodulin-binding Proteins AT2G36910 45.231 0.0 1092
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02626 K05658 - gmx:100800293 2190.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02626 11 53542585 53548262 Cca11g02626 11 53542585 53548262 ECH