Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02625 ATGGCAGATGATATTGACTTGAATGGAGGTTCTGACAGCAAGCAAGATTCTAATAGCAAGGCGAAAGATGAAACTGCCAAAACAGTACCCTTGTACAAGCTTTTCTCATTTGCTGATCCTTTGGATCATTTATTGATGTTTGTGGGGACTGTGGGAGCTATCGGGAATGGAGTCTCCATGCCCTTAATGAATCTGATATTTGGAAATATGATCAATGCATTTGGAGGATCCAAAAACTCTAAAGAAGTTGTTGATGGAGTTTCCAAGGTGTCTCTGAAACTTCTATACTTGGCTGTGGGTACGTTGTTTGTGTCACTTTTGCAGTTGACTTGCTGGATGATCACTGGGGATAGACAAGCTGCAAGGATTAGAGGCTTATACCTTCAAACAATTTTGAGACAAGATGTCAGCTTCTTTGATAGGGAAACTAAGACTGGAGAGGTTGTTGGAAGGATGTCAGGTGATACTGTTCTTATTCAAAATGCTATGGGTGAGAAGGTGGCACGGTTCATACAGTTCCTGGCAACTTTCGTTGGAGGTTTTGTAATAGCATTCATCAAGGGATGGCTTCTAACTGTTGTCATGATATCTTGTATTCCACCTCTTGTTCTGTGTGGCGCTATGATAAGCCTATTTATTGCAAAAGCATCATCCAGGGCACAAGCAGCTTATTCTAAAGCAGCAAGTGCAGTAGAGCAGACAATAGGTTCAATCCGAACTGTTGCATCATTCACTGGGGAGAGAAAAGCTATAGCTAAATATAACCAGTCCTTAATCAAAGCTTACAAGGCTGGAGTGCAAGAGGCACTAGCTTCTGGTTTGGCGTTTGGTTCTCTCTCTTTTGTTTTTACCTGCAGTTATGGCTTGGCTATATGGTTTGGTGCAAAAATGATAATAGAGAAAGGATATACAGGAGGAGATGTTGTGACAGTAATTCTTTCTGTGTCGGCTGGCTCCATGTCTCTTGGGCAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCTGGACAAGCTGCTGCCTTTAAGATGTTTGAAACAATTAAGAGGAAACCAGAAATTGATGCTTATGACACCACTGGTCAGCAACTTGATGACATTCGCGGAGATATAGAGCTTAGGGAGGTTTGCTTTAGTTATCCTACAAGACCAGATGAACTGATATTCAATGGATTTTCCCTTTCAATGCCAAGTGGCACCACCACAGCTTTGGTAGGAGAAAGTGGGAGTGGGAAGTCCACAGTTGTTAGTTTGATAGAGAGATTTTATGATCCACAGGCAGGGGAAGTTCTCATTGACAGTATCAACCTCAAAGCATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTTAGCCAGGAACCAGTTCTCTTTACTTGCAGTATTAAAGAGAATATTGCCTATGGAAAGGATGGTGCAACTGATGAAGAAATCAGAACTGCAGCAGAACTAGCGAATGCTGCCAAATTCATAGATACACTTCCGCAGGGACTTGACACAATGGTTGGTGAGCATGGAACTCAACTCTCTGGGGGTCAAAAGCAAAGAGTTGCAATAGCAAGAGCCATTTTGAAAGATCCAAGAATCCTACTTCTGGATGAAGCTACTAGTGCCCTTGATGCTGAATCTGAGAAACTTGTACAGGAGGCATTGGACAGAATAATGATAGATCGAACAACTATCATTGTAGCCCACCGCTTAAGTACTATAAGGAATGCTGATAGCATTGCTGTTATTCATCAAGGAAAAATAATTGAAAGAGGTTCTCATGCTGAGCTCACCAATGATCCTAATGGAGCCTATAGCCAGCTCATTAGACTTCAAGAAATTAAAGGATCAGAACAACATGCTTCACATGACCTAGACAAGCTAGAAAGTATAGTACCTTCTGGAAGACAATCAAGTCAAAGATCTTTCTTGCAATCTATAAGCGAAAGGTCATCTGTAGTTGGAAGCATTGGTCAAAAGCAATTCTCAGAGTCACATGATGTGCCCACAATGGTTGGCTTCTTGGAACCTTCTGGTGGAGGAACTCAAGCTCCTCCTTCAACAGTTTCTTCACCCCCGGAAGTGCCACTGTATCGTCTGGCATATTTAAACAAGCCAGAGATTCCAGTCTTACTGATAGGGACTTTAGTTGCAGTAGTATGTGGACTATTAACACCCATTATTGCACTCTTTGTTTCCAAAATGATAAATATTTTCTATGAGCCAGTTGATGAACTTCGTAAAGATTCAAAACTTTGGGCACTGCTATTTGTTGCACTTGGTATGGTATCATTTATCTTGCCTCCATGTAGGTTATACCTTTTTGGCGTTGCTGGTGGTAAGTTAATCAAAAGGATCCGGAAAATGTGTTTTGAGAAAGTAGTTCACATGGAAGTTAGTTGGTTTGATGAAGCTGGACATTCAAGCGGAGAAATAGGAGCAAGGCTCTCTTCTGATGCAGCTGCTGTTCGAGCTTTGGTTGGAGATGCACTTGGTTTGCTGGTTCAAAATATTGCTACAGCAGTAGCTGGCTTGGCAATTGCTTTTGAAGCAAGCTGGCAACTTGCTCTTATAATGCTTGCTTTGGCACCTCTATTAGCACTAACTGGATACCTGCAATTCAAGTTCTTGATAGGATTCAGCGCAGATGCAAAGAAACTGTATGAGGAAGCAAGTCAAGTGGCTAATGATGCTGTAGGGAGTATAAGAACAGTTGCTTCTTTTTGTGCTGAAGAGAAGGTGATGGCATTATACCAGGGAAAATGTGAAGGACCAATTAAGACAGGCATAAGGCGAGGGATAATTAGTGGAGTTAGTTATGGGGTATCATTCTTCATGCTATATGCAGTTTATGCATTGAGCTTTTATGTTGGAGCTCGACTTGTAGATGATGGAAAAGCTACAATGTCTGATGTTTTCCGTGTATTTTTTGCTCTCAGCATGGCAGCTCTGGGAATTTCTCAACCTGGTTCTTTGGTCCCTGATTCAACCAATTCAAAAAGTGCTGCTGCTTCCGTATTTGCTATTATTGATCGAAAATCACAAATAGACCCAAGTGATGAATCTGGATTGACATTGGAAGAAATCAACGGAGAGATTGAATTTAACCATGTCAGTTTCAAGTATCCTTCCAGACCTGATGTTCAAATATTCAGAGATCTTTGTTTGACCATTGACCACGGCAAGACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTATTACAAAGATTTTATGATCCAGACTCAGGTCACATTACACTGGATGGAAAAGAAATCAAAAGCATGCAAGTGAAATGGCTGAGGCAACAGATGGGCCTGGTGAGCCAAGAGCCTGTGCTGTTTAATGACACCATCAGAGCCAATATTGCTTATGGAAAGGGAGGAGATGCAACAGAAGCAGAAATTATAGCTGCAGCAGAACTGGCAAATGCTCACAACTTCATTAGTAGTTTGCAATTGGGCTATGACACAGTAGTAGGGGAGAGAGGGATTCAACTATCTGGAGGACAGAAGCAAAGGGTGGCAATTGCAAGAGCTATAGTGAAGAATCCAAGAATATTACTACTAGATGAAGCCACAAGTGCTCTTGATGCTGAGTCTGAGAAAGTGGTTCAGGATGCACTAGACCGTGTTATGGTGGACCGAACCACAATTGTAGTGGCTCATAGGTTGTCCACTATTAAGGGTGCGGATTTGATTGCAGTAGTTAAAAATGGGGTAATAGCAGAGAAGGGAAAGCATGAAGCATTACTGAACATGGGAGGTGACTATGCTTCCTTGGTAGCATTTCACACAACTGCTTCTACATCTTAG 3819 0.4187 MADDIDLNGGSDSKQDSNSKAKDETAKTVPLYKLFSFADPLDHLLMFVGTVGAIGNGVSMPLMNLIFGNMINAFGGSKNSKEVVDGVSKVSLKLLYLAVGTLFVSLLQLTCWMITGDRQAARIRGLYLQTILRQDVSFFDRETKTGEVVGRMSGDTVLIQNAMGEKVARFIQFLATFVGGFVIAFIKGWLLTVVMISCIPPLVLCGAMISLFIAKASSRAQAAYSKAASAVEQTIGSIRTVASFTGERKAIAKYNQSLIKAYKAGVQEALASGLAFGSLSFVFTCSYGLAIWFGAKMIIEKGYTGGDVVTVILSVSAGSMSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGQQLDDIRGDIELREVCFSYPTRPDELIFNGFSLSMPSGTTTALVGESGSGKSTVVSLIERFYDPQAGEVLIDSINLKAFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRTAAELANAAKFIDTLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESEKLVQEALDRIMIDRTTIIVAHRLSTIRNADSIAVIHQGKIIERGSHAELTNDPNGAYSQLIRLQEIKGSEQHASHDLDKLESIVPSGRQSSQRSFLQSISERSSVVGSIGQKQFSESHDVPTMVGFLEPSGGGTQAPPSTVSSPPEVPLYRLAYLNKPEIPVLLIGTLVAVVCGLLTPIIALFVSKMINIFYEPVDELRKDSKLWALLFVALGMVSFILPPCRLYLFGVAGGKLIKRIRKMCFEKVVHMEVSWFDEAGHSSGEIGARLSSDAAAVRALVGDALGLLVQNIATAVAGLAIAFEASWQLALIMLALAPLLALTGYLQFKFLIGFSADAKKLYEEASQVANDAVGSIRTVASFCAEEKVMALYQGKCEGPIKTGIRRGIISGVSYGVSFFMLYAVYALSFYVGARLVDDGKATMSDVFRVFFALSMAALGISQPGSLVPDSTNSKSAAASVFAIIDRKSQIDPSDESGLTLEEINGEIEFNHVSFKYPSRPDVQIFRDLCLTIDHGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGKEIKSMQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHNFISSLQLGYDTVVGERGIQLSGGQKQRVAIARAIVKNPRILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLNMGGDYASLVAFHTTASTS 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02625 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1018 1264 IPR027417 -
Cca11g02625 1272 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 369 605 IPR003439 GO:0005524
Cca11g02625 1272 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1028 1265 IPR003439 GO:0005524
Cca11g02625 1272 CDD ABC_MTABC3_MDL1_MDL2 369 607 - -
Cca11g02625 1272 Gene3D - 367 622 IPR027417 -
Cca11g02625 1272 CDD ABC_6TM_Pgp_ABCB1_D1_like 46 330 - -
Cca11g02625 1272 SUPERFAMILY ABC transporter transmembrane region 694 1012 IPR036640 GO:0005524|GO:0016021
Cca11g02625 1272 Gene3D - 1018 1271 IPR027417 -
Cca11g02625 1272 ProSitePatterns ABC transporters family signature. 508 522 IPR017871 GO:0005524
Cca11g02625 1272 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 707 983 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g02625 1272 ProSitePatterns ABC transporters family signature. 1168 1182 IPR017871 GO:0005524
Cca11g02625 1272 Pfam ABC transporter 388 536 IPR003439 GO:0005524
Cca11g02625 1272 Pfam ABC transporter 1048 1196 IPR003439 GO:0005524
Cca11g02625 1272 PANTHER - 15 1268 - -
Cca11g02625 1272 CDD ABC_6TM_Pgp_ABCB1_D2_like 696 1011 - -
Cca11g02625 1272 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 47 334 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g02625 1272 SMART AAA_5 1055 1248 IPR003593 -
Cca11g02625 1272 SMART AAA_5 396 582 IPR003593 -
Cca11g02625 1272 SUPERFAMILY ABC transporter transmembrane region 33 353 IPR036640 GO:0005524|GO:0016021
Cca11g02625 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 607 IPR027417 -
Cca11g02625 1272 Gene3D ABC transporter type 1, transmembrane domain 93 998 IPR036640 GO:0005524|GO:0016021
Cca11g02625 1272 MobiDBLite consensus disorder prediction 1 22 - -
Cca11g02625 1272 Pfam ABC transporter transmembrane region 46 315 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g02625 1272 Pfam ABC transporter transmembrane region 706 977 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g02625 1272 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 15 1268 - -
Cca11g02625 1272 CDD ABC_MTABC3_MDL1_MDL2 1028 1263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02625 Cca-Chr11 53520596 53526071 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02625 22 1271 Calmodulin-binding Proteins AT2G36910 44.076 0.0 1031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02625 K05658 - gmx:100799760 2076.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02625 11 53520596 53526071 Cca11g02625 11 53520596 53526071 ECH