Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca11g02623 | ATGGCGGTTGATATCAATTTGAATGGAGATGCTGACAATAACCGAGATCCAAGGAGCAAGGCCGAAGAAAAAAATGTCAAAACAGTACCCTTATACAAGCTTTTTGCATTTGCTGATCGTTTGGATCGTTTATTGATGTTTGTGGGGACTGTGGGTGCTATTGGGAATGGAGCCTCCACCCCCTTAATGACTCTGATATTCGGAGATACGGTCAATGCATTTGGAGGATCCCAAAGCACTCACCAAATTGTTCATGAAGTTTCTAAGGCGTCTCTGAAATTTGTATACTTGGCTATTGGAACCTTTTTCGCATCACTTTTGCAGTTGACATGCTGGATGATCACTGGTGAGAGACAAGCTGCAAGAATTAGAGGCTTATACCTTCAAACAATTTTAAGGCAAGATGTCAGCTTCTTTGATCAAGAGACTAATACTGGAGAGGTTGTTGGAAGGATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGTGAGAAGGTGGGACAGTTCATACAATTCGCATCAACTTTCGTTGGAGGTTTTGTGATAGCATTCGTCAAGGGGTGGCTTCTAACGTTTGTCATGTTATCTACTATTCCACCTGTTGTCTTCGCTGGGGCTATTACAAGCCTGGTTATTTCAAAAGCATCATCCATGGGACAAGCAGCATATTCTATAGCAGCAAGTGTAGTAGAGCAGACAATAGGTTCTATCCGAACTGTTGCATCATTCACTGGGGAGAAGCAAGCTATAGCTAAATATAATCAGTCTCTAATCAAAACTTATAAGGCTGGAGTGCAAGAGGCAATAGCTTCTGGTTTGGGGTTTGGTACTCTCTATTTTGTGTTTACCTCCAGTTATGGTTTGGCTGTATGGTTTGGTGCAAAAATGATCATAGAGAAAGGATATACAGGAGGAGATGTCCTGACTGTATTATTTGCTATATTGACTGGATCCATGTCTCTTGGGCAAGCATCTCCAAGCATGAGTGCCTTTTCTGCTGGACAAGCTGCAGCTTATAAGATGTTTGAAACAATTAAGAGGAAGCCAGAAATTGATCCTTATGACACTACTGGTCTGCAGCTTGATGACATTCGAGGAGATATAGAACTTAGGGATGTTTGCTTTAGTTATCCTACAAGACCACATGAACTGATATTCAATGGATTTTCCCTTACAATGCCAAGTGGCACTACCACAGCTTTGGTAGGAGAGAGTGGGAGTGGGAAGTCCACAGTTGTTAGTTTGATAGAGAGATTTTATGATCCACAGGCAGGTGAAGTTCTCATTGACGGTATCAACCTCAAGGAATTTCAACTGAAATGGATCAGACAGAAAGTAGGCCTAGTTAGCCAGGAACCAGTTCTTTTTACTTGCAGTATTAAAGATAATATTGCCTATGGCAAGGATGGTGCAACTGTTGAAGAAATCAGAGCTGCAGCGGAACTAGCTAATGCTTTCAAATTTATAGATAAGCTTCCGCAGGGACTTGACACAATGGTTGGTGAGCATGGAACTCAGCTCTCTGGGGGTCAAAAACAAAGAGTTGCAATAGCAAGAGCTATTTTGAAAGACCCAAGAATCCTACTTCTAGATGAAGCTACAAGTGCCCTTGATGCTGAATCTGAAAAAATTGTGCAGGAGGCATTGGATAGAATAATGAAAGACCGAACAACTGTCATTGTCGCCCACCGCTTAAGTACTGTAAGGAATGCTGATAGCATTGCTGTTATTCATCGAGGAAAAGTAGTTGAAAGAGGGTCACATGCTGAGCTCACCAATGATCCTAATGGAGCCTATAGCCAGCTCATTAGACTGCAAGAAGTTAAAGGGTTGGAAAAAAATTCTGCAAATGACAGAGACAAGGTAGAAAGTATTGTGCATTATGGAAAACAATCAAGTCAAAAATCTTATACACGATCTATAAGCCAAAGGTCGTCAGGAGCTGGAAGCAGTGGTCGTATCTCGTTCTCAGCATCACATGGTGTGCCCACAATGATTGGTTTCTTGGAACCTGCAGGTGGAGAACCTCGTGATCCTAATCCAACAGTTTCTTCACAACCAGAAGTGCCAGTCCATCGCCTGGCATATTTAAACAAGCCAGAGATTCCAGTCTTACTGTTAGGGACTATAGCTGCAGTAATAAATGGACTATTGTTTCCCATTATGGCATACTTAATTTCCAAAATGATAAGTATTTTCTATAAGCCATTTCATGAACTTCGTAAAGATTCAAAACGTTGGGCATTACTATATGTTGGGCTTGGTGTGATATCATTTATCGTTAGTCCATGTAGATTCTATTTTTTTGGCGTTGCTGGTGGTAAGTTGATCAAAAGGATTCGAAAAATGTGTTTTGAGAAAGCAATTCACATGGAAGTTAGTTGGTTTGATGAAGCTGAACATTCAAGTGGAGCAATTGGAGCAAGGCTCTCTTCTGATGCAGCTGCTGCCCGAGCTTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAAATATTGCTACAGCAGTAGGTGGCTTGGCAATTGCTTTTGAAGCATGCTGGGAGCTTGCTTTTCTAATGCTTGCTTTGGCACCTCTTTTAACACTAAATGGATATGTGCAATTCAAGTTCTTAAAAGGATTCAGTGCAGATGCTAAGAAACTGTATGAGGAAGCAAGTCAAGTGGCAAATGATGCTGTAGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAAAGAAGGTGATGGAATTATACCAGCAAAAATGTGAAGGACCAATTCAGACAGGCATAAGGCGAGGGATAATTAGTGGAATTAGTTATGGCATATCATTCTTCTTGCTATATGCAGTTTATGCATGCTGTTTTTATGTTGGAGCTAAACTTATAGATGATGGAAAAGCAACAATGACAGAAGTTTTCCGAGTTTTTTTTGCTCTCAGCATGGCAGCTATGGGAATCTCTCAATCTGGTTCTTTGGTCCCTGATTCATCTGGTTCAAAAAGTGCTGCTGCTTCCGTATTTGCTATTATTGATCGAAAATCACAAATAGACCCAAGTGATGAATCTGGATTGACATTGGAAGAAGTCAAGGGAGAGATTGAATTTAACCATGTCAGTTTCAGGTATCCTACCAGACCAGATATTGAAATATTTAGAGATCTTTGCCTGATCATTCGTAGCGGCAAGACAGTTGCACTGGTTGGAGAAAGTGGAAGCGGAAAATCAACAGTGATCTCATTATTACAAAGATTTTATGATCCAGACTCAGGTCAGATTACACTGGATGGAAAAGAAATCCAAAGCATGCAAGTGAAATGGCTAAGACAACAGATGGGCCTGGTGAGCCAAGAGCCTGCGTTGTTTAATGACACCATCAGAGCCAATATTGCATACGGAAAGAGAGGGGACGCAACAGAAGCAGAAATTATAGCTGCAGCAGAACTGGCAAATGCTCACAACTTCATTAGTAGTTTGCAGAAGGGTTATGACACAATGGTAGGGGAGAGAGGGATTCAACTATCTGGAGGACAGAAACAAAGGGTCGCAAATGCAAGAGCTAAAGAGAAGAATCCAAGAATATTACTCCTAGAAGAAGCCACAAGTGCACTTGATGCCGAGTCTGAGAAAGTGGTTCAGGATGCACTAGACCGTGTTATGGTGGATCGAACCACAATAATAGTGGCTCATAGGTTATCCACTATTAAGGGTGCGGATTTGATTGCAGTAGTTAAAAATGGGGTGATAGCAGAGAAGGGAAAGCATGAAGCATTACTGAACAAGGGAGGTGACTATGCTTCCTTAGTAGCATTGCACGCAACTGCTTCTACATCGTAG | 3819 | 0.4156 | MAVDINLNGDADNNRDPRSKAEEKNVKTVPLYKLFAFADRLDRLLMFVGTVGAIGNGASTPLMTLIFGDTVNAFGGSQSTHQIVHEVSKASLKFVYLAIGTFFASLLQLTCWMITGERQAARIRGLYLQTILRQDVSFFDQETNTGEVVGRMSGDTVLIQDAMGEKVGQFIQFASTFVGGFVIAFVKGWLLTFVMLSTIPPVVFAGAITSLVISKASSMGQAAYSIAASVVEQTIGSIRTVASFTGEKQAIAKYNQSLIKTYKAGVQEAIASGLGFGTLYFVFTSSYGLAVWFGAKMIIEKGYTGGDVLTVLFAILTGSMSLGQASPSMSAFSAGQAAAYKMFETIKRKPEIDPYDTTGLQLDDIRGDIELRDVCFSYPTRPHELIFNGFSLTMPSGTTTALVGESGSGKSTVVSLIERFYDPQAGEVLIDGINLKEFQLKWIRQKVGLVSQEPVLFTCSIKDNIAYGKDGATVEEIRAAAELANAFKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESEKIVQEALDRIMKDRTTVIVAHRLSTVRNADSIAVIHRGKVVERGSHAELTNDPNGAYSQLIRLQEVKGLEKNSANDRDKVESIVHYGKQSSQKSYTRSISQRSSGAGSSGRISFSASHGVPTMIGFLEPAGGEPRDPNPTVSSQPEVPVHRLAYLNKPEIPVLLLGTIAAVINGLLFPIMAYLISKMISIFYKPFHELRKDSKRWALLYVGLGVISFIVSPCRFYFFGVAGGKLIKRIRKMCFEKAIHMEVSWFDEAEHSSGAIGARLSSDAAAARALVGDALGLLVQNIATAVGGLAIAFEACWELAFLMLALAPLLTLNGYVQFKFLKGFSADAKKLYEEASQVANDAVGSIRTVASFCAEKKVMELYQQKCEGPIQTGIRRGIISGISYGISFFLLYAVYACCFYVGAKLIDDGKATMTEVFRVFFALSMAAMGISQSGSLVPDSSGSKSAAASVFAIIDRKSQIDPSDESGLTLEEVKGEIEFNHVSFRYPTRPDIEIFRDLCLIIRSGKTVALVGESGSGKSTVISLLQRFYDPDSGQITLDGKEIQSMQVKWLRQQMGLVSQEPALFNDTIRANIAYGKRGDATEAEIIAAAELANAHNFISSLQKGYDTMVGERGIQLSGGQKQRVANARAKEKNPRILLLEEATSALDAESEKVVQDALDRVMVDRTTIIVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLNKGGDYASLVALHATASTS | 1272 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca11g02623 | 1272 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 361 | 607 | IPR027417 | - | |
Cca11g02623 | 1272 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1018 | 1264 | IPR027417 | - | |
Cca11g02623 | 1272 | CDD | ABC_MTABC3_MDL1_MDL2 | 369 | 607 | - | - | |
Cca11g02623 | 1272 | Pfam | ABC transporter | 388 | 536 | IPR003439 | GO:0005524 | |
Cca11g02623 | 1272 | Pfam | ABC transporter | 1049 | 1196 | IPR003439 | GO:0005524 | |
Cca11g02623 | 1272 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1028 | 1265 | IPR003439 | GO:0005524 | |
Cca11g02623 | 1272 | SMART | AAA_5 | 396 | 591 | IPR003593 | - | |
Cca11g02623 | 1272 | SMART | AAA_5 | 1055 | 1248 | IPR003593 | - | |
Cca11g02623 | 1272 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 707 | 993 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Cca11g02623 | 1272 | SUPERFAMILY | ABC transporter transmembrane region | 27 | 354 | IPR036640 | GO:0005524|GO:0016021 | |
Cca11g02623 | 1272 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 46 | 342 | - | - | |
Cca11g02623 | 1272 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 369 | 605 | IPR003439 | GO:0005524 | |
Cca11g02623 | 1272 | PANTHER | - | 10 | 1268 | - | - | |
Cca11g02623 | 1272 | Gene3D | - | 1018 | 1271 | IPR027417 | - | |
Cca11g02623 | 1272 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 47 | 334 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Cca11g02623 | 1272 | SUPERFAMILY | ABC transporter transmembrane region | 693 | 1012 | IPR036640 | GO:0005524|GO:0016021 | |
Cca11g02623 | 1272 | ProSitePatterns | ABC transporters family signature. | 508 | 522 | IPR017871 | GO:0005524 | |
Cca11g02623 | 1272 | Pfam | ABC transporter transmembrane region | 46 | 320 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Cca11g02623 | 1272 | Pfam | ABC transporter transmembrane region | 706 | 978 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Cca11g02623 | 1272 | Gene3D | ABC transporter type 1, transmembrane domain | 92 | 1002 | IPR036640 | GO:0005524|GO:0016021 | |
Cca11g02623 | 1272 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 696 | 1011 | - | - | |
Cca11g02623 | 1272 | Gene3D | - | 367 | 620 | IPR027417 | - | |
Cca11g02623 | 1272 | PANTHER | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL | 10 | 1268 | - | - | |
Cca11g02623 | 1272 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cca11g02623 | 1272 | CDD | ABC_MTABC3_MDL1_MDL2 | 1028 | 1263 | - | - | |
Cca11g02623 | 1272 | MobiDBLite | consensus disorder prediction | 628 | 655 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca11g02623 | Cca-Chr11 | 53487105 | 53493385 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca11g02623 | 16 | 1266 | Calmodulin-binding Proteins | AT2G36910 | 43.962 | 0.0 | 1032 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca11g02623 | K05658 | - | gmx:100799760 | 1995.32 |