Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02622 ATGGTGGCTAAGACTAGCTTGGATGGAAATGTGACCTCAACTGAGATAACAGGATCAACAAGTGATCATGCACCAGTTCAAGGTCCTGAAAATACCAGAGAAATGGATTCCAAGAAGAACAAGGTGAAGGTTGAAAGGAATAAAACAGTACCCTTTTACAAACTTTTCTCATTTGCAGACTCTTGGGATTATCTTCTGATGCTTGTTGGGACAATAAGTGCTGTTGGTAATGGAATCTCTATGCCTTTAATGACTGTACTTATTGGAGATGCGATTGATGCTTTCGGAGGAAATGCTGTTAATAAACAAGTAGTAGTCCATGAAGTTTCCAAGGCCTCTCTGAAGTTTGCATCCATAGGTGCTGGTGCCTTTTTTGCAGCATTCTTGCAGGTGGCTTGCTGGGTGATCACCGGGGAGAGACAAGCAGCAAGAATAAGAGGCTTATACCTCAAAGCAATTTTGAGGCAAGATATCAGCTTCTTTGACAAGGAAACCAATACTGGTGAGGTTGTCGGAAGAATGTCAGGTGACACAGTTCTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAATTCATACAGTATGTGGCATGTTTTTTTGGAGGTATAGTCATAGCATTCATCAACGGTTGGCTTCTAAGCcttgttcttctatcttctcttccgcttcttgtcctctctGGTTCCATAATGAGCATTGCTTTTGCAAAGATGGCATCCCGTGGACAAGCAGCGTATTCTGAAGCAGCAACTGTAGTGGAGCGGACAATTGGTTCAATTCGAACTGTTGCATCGTTTACCGGCGAGAAGCAAGCTATAGCTAAATACAATCAATACTTAACTAAAGCTTACAGAGTTGGAGTGCAAGAGGGTGTGGCTGGTGGCTTTGGCTTTGGTTTAGTTCGTTTATTTATTTACAGTACCTATGGTTTAGCAGTATGGTTTGGAGGGAAGATGGTACTAGAGAAAGGTTACACAGCAGGACAAGTCATTAGTGTATTTTTTGCAGTATTGACTGGTTCCATGTCTCTTGGGCAAGCATCTCCAAGCTTAACTGCATTTGCTGCAGGACAAGCTGCAGCCTTTAAAATGTTTGAAACAATAATGAGGCAACCAGATATTGATGCTTATGACACTTCTGGTCGACAGGTAGATGATATTTCTGGAGATATAGAACTTAGGGAAGTTTGCTTTAGTTATCCTTCAAGACCTGATGAACAGATATTCAATGGATTTTCAATTTCAATATCAAGTGGCACAACTGCAGCATTGGTAGGGCAAAGTGGGAGTGGGAAATCAACAGTTATTAGTTTAATTGAGAGATTCTATGATCCACAAGCTGGTGGAGTTCTCATTGATGGGATCAACCTCAAAGAATTTCAATTGAAATGGATCAGACAGAAAATAGGTCTTGTCAGCCAGGAACCAATTCTCTTTACTTGTAGCATTAAAGAGAATATTGCCTATGGTAAGGATGGGGCAACAGATGAAGAAATCAGAGCTGCAGCTGAACTCGCTAATGCTGCTAAATTCATAGACAAATTTCCCCATGGACTTGACACAATGGTTGGAGAGCATGGAACACAGCTCTCCGGAGGTCAAAAACAAAGAATATGTATAGCAAGAGCAATCCTGAAGGACCCAAGAATTCTGCTCCTTGACGAAGCTACAAGTGCTCTTGATGCAGAATCAGAGAGAGTGGTGCAAGAGACACTAGACAGAATTATGATAAACCGAACAACTGTCATTGTAGCCCATCGCCTAAGCACAATAAGGAATGCTGACATCATTGCTGTTATTCATCAAGGAAAAGTAATAGAAAAAGGCACACATGCTGAGCTCACTGAAGATCCTGATGGAGCTTTTAGCCAGCTCATTAGATTGCAAGAAATCAAAAGGGAGTCAGAAGAGCATGATGCATATGACTCAAGAAGGCCAGAAAAGTATGAAGATTCTGAACAACAATCAAGCGAACGGTTTTCTTTTCCTCAATCACTAAGCCGGGGATCATCAGGAAGAGGAAACAGCAGTCAGCACTCATTCAGGTCATCAAATGTCATGCCTACCACACTAAATCTCTCTGAAACATCAGAAGGACCTGAAGTTCTTCCTTCAGCAGCCTCACATAAACCTAAAGAAGTTTCACTTCTCCGCATTGCTTATCTTAACAAGCCTGAAATTCCAGTGTTGCTAATGGGGACTCTAGCAGCAGCAGCAACTGGGGCAATACTACCCACCGTGGGGCTTCTTCTCTCCCACATGATAAATACTTTCTATGAGCCTGCAGATGAACTCCGGAAAGACTCTAAGTTTTGGGCATTAATATTTGTTGCCCTTAGTGTGGCTGCCTTCATATTTCTTCCGTTAAGGTCCTATTTTTTTGCTGTAGCTGGTTCTAAGCTGATAAAAAGGATCCGGCTAATGTGTTTTGAGAAAATAATTCACATGGAAGTAGAATGGTTTGATAAAGCTGAACATTCAAGTGGAGCACTTGGAGCAAGGCTGTCAAATGACGCGGCTTCTATTCGAACTTTGGTTGGGGATGCTCTTGGATTGCTGGTTCAAGATATTTCTACAGCAATTACAGCCTTGGTAATTGCCTTTGAGGCAAATTGGCAGCTTTCTCTCATCGTTCTTGTTTTGGTACCTCTAGTATTAGTAAATGGACATGCACAAATGAAGTCCATGCAAGGATTCAGCACAAATGCTAAGAAACTATATGAGGAAGCAAGTCAAGTAGCGAATGATGCAGTGGGGAATATCAGAACAGTTGCTGCTTTCTGTGCAGAAGAGAAAGTGATGGAGTTATACCAGAAGAAATGTTTAGGACCAATCCAGACAGTTTTTATGCTGGGGCCAGACTTGTTGAGCATGACAAAACATCGATCTCAGATGTTTTCCGTGTATTTTTTGCTCTCACAATGGCAGCTGTAG 2934 0.4127 MVAKTSLDGNVTSTEITGSTSDHAPVQGPENTREMDSKKNKVKVERNKTVPFYKLFSFADSWDYLLMLVGTISAVGNGISMPLMTVLIGDAIDAFGGNAVNKQVVVHEVSKASLKFASIGAGAFFAAFLQVACWVITGERQAARIRGLYLKAILRQDISFFDKETNTGEVVGRMSGDTVLIQEAMGEKVGKFIQYVACFFGGIVIAFINGWLLSLVLLSSLPLLVLSGSIMSIAFAKMASRGQAAYSEAATVVERTIGSIRTVASFTGEKQAIAKYNQYLTKAYRVGVQEGVAGGFGFGLVRLFIYSTYGLAVWFGGKMVLEKGYTAGQVISVFFAVLTGSMSLGQASPSLTAFAAGQAAAFKMFETIMRQPDIDAYDTSGRQVDDISGDIELREVCFSYPSRPDEQIFNGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGGVLIDGINLKEFQLKWIRQKIGLVSQEPILFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKFPHGLDTMVGEHGTQLSGGQKQRICIARAILKDPRILLLDEATSALDAESERVVQETLDRIMINRTTVIVAHRLSTIRNADIIAVIHQGKVIEKGTHAELTEDPDGAFSQLIRLQEIKRESEEHDAYDSRRPEKYEDSEQQSSERFSFPQSLSRGSSGRGNSSQHSFRSSNVMPTTLNLSETSEGPEVLPSAASHKPKEVSLLRIAYLNKPEIPVLLMGTLAAAATGAILPTVGLLLSHMINTFYEPADELRKDSKFWALIFVALSVAAFIFLPLRSYFFAVAGSKLIKRIRLMCFEKIIHMEVEWFDKAEHSSGALGARLSNDAASIRTLVGDALGLLVQDISTAITALVIAFEANWQLSLIVLVLVPLVLVNGHAQMKSMQGFSTNAKKLYEEASQVANDAVGNIRTVAAFCAEEKVMELYQKKCLGPIQTVFMLGPDLLSMTKHRSQMFSVYFLLSQWQL 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02622 977 SMART AAA_5 418 590 IPR003593 -
Cca11g02622 977 MobiDBLite consensus disorder prediction 633 707 - -
Cca11g02622 977 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 68 356 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g02622 977 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 731 940 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g02622 977 MobiDBLite consensus disorder prediction 633 655 - -
Cca11g02622 977 CDD ABC_6TM_Pgp_ABCB1_D1_like 67 352 - -
Cca11g02622 977 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 1 948 - -
Cca11g02622 977 Gene3D ABC transporter type 1, transmembrane domain 54 647 IPR036640 GO:0005524|GO:0016021
Cca11g02622 977 SUPERFAMILY ABC transporter transmembrane region 718 944 IPR036640 GO:0005524|GO:0016021
Cca11g02622 977 SUPERFAMILY ABC transporter transmembrane region 48 373 IPR036640 GO:0005524|GO:0016021
Cca11g02622 977 Gene3D - 381 630 IPR027417 -
Cca11g02622 977 MobiDBLite consensus disorder prediction 6 27 - -
Cca11g02622 977 PANTHER - 1 948 - -
Cca11g02622 977 MobiDBLite consensus disorder prediction 1 41 - -
Cca11g02622 977 Pfam ABC transporter transmembrane region 67 342 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g02622 977 Pfam ABC transporter transmembrane region 730 941 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g02622 977 ProSitePatterns ABC transporters family signature. 530 544 IPR017871 GO:0005524
Cca11g02622 977 CDD ABC_6TM_Pgp_ABCB1_D2_like 720 949 - -
Cca11g02622 977 MobiDBLite consensus disorder prediction 656 701 - -
Cca11g02622 977 CDD ABC_MTABC3_MDL1_MDL2 391 629 - -
Cca11g02622 977 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 629 IPR027417 -
Cca11g02622 977 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 391 627 IPR003439 GO:0005524
Cca11g02622 977 Gene3D ABC transporter type 1, transmembrane domain 687 975 IPR036640 GO:0005524|GO:0016021
Cca11g02622 977 Pfam ABC transporter 410 558 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02622 Cca-Chr11 53477283 53483866 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02622 48 952 Calmodulin-binding Proteins AT2G36910 41.144 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02622 K05658 - gmx:100777713 1560.81