Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02621 ATGGCGAAGCAGCAAGATTCCAAGAACATGCTGAAGGACAAAAGCAACAAAACAGTACCCTTTTACAAACTGTTTTCATTTGCAGACTCTTGGGATTATCTACTGATGTTTGTTGGGACAATAAGTGCTGCTGCCAATGGAGTGACTAAGGCTTTAACGAATATAGTTATGGGAGAAGCAGTTGATGCTTTTAGAGGAAACGGTAACACGGATGTAGTTCATGAAGTTTCCAAGGTGTCTCTGAAGTTTGCACTAATGGGTGCAGGTGCCTTTCTGGCAGCATTTCTACAGGTGGCTTGTTGGGTGTCCACCGGGGAGAGACAAGCAGCGAGAATAAGAGGTTTATACCTCAAAGCAATTTTGAGGCAAGATATCAGCTTCTTTGATAAGGAAACCAATACTGGTGAGGTTGTTGGAAGGATGTCAGGTGACACAGTTCTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAATTCATACAGTGTGTGGCGTGTTTTTTAGGAGGTATAGTCATAGCCTTCATCAAGGGTTGGCTTCTAACCGTGGTCCTTCTATCTTCTATTCCACCTCTTGCCCTCTCTGGTTCCATAATGAGCTTTGCTTTTGCAAAGTTGGCATCCCGTGGACAAGCAGCTTATTCTGAAGCAGCAACTGTAGTAGAGCGGATAATTGGTTCAATTCGAATTATTGCATCATTTACTGGCGAAAATCAAGCTATAGCTCAATACAATCAATCCCTAGCCAAAGCTTACAGGACTGCAGTACAAGACGGAGTGGCTGCTGGATTAGGCCTTAGTGCAATTCGTTTATCTATCAACAGCAGTTATGCATTGGCTGTATGGTATGGAGGGAAGATGGTACTAGAGAAAGGCTATACAGGAGGTGAAGTCATGAGTATATTTTTGGCCCTATTTTTTGCTTCCATGTCTTTGGGGCAGGTTTCTACAAGTTTAACTGCATTTGCTGCAGGACAGGCTGCTGCCTTAAAAATGTTTGAAACAATAAACAGGGAGCCTGATATTGATGCTTACGACACTGCTGGTCGACAGGTAGATGATATTTCTGGAGATATAGAATTTAGGGAGGTTTGCTTTAGTTATCCTTCAAGACCAGATGAATTGATATTCAATGGATTTTCAATTTCAATATCAAGTGGTACTTCGGCGGCTTTGGTAGGGAAAAGTGGGAGTGGTAAATCAACAGTTATTAGTTTGATTGAAAGATTTTATGATCCACAAGCTGGTGATGTTCTCATTGACGGTATCAACCTCAGAGAATTTCAGTTGAAATGGATAAGACAAAAAATTGGCCTTGTTAACCAAGAACCAGTTCTCTTTACTTGTAGTATAAAAGAAAATATTGCCTATGGTAAGGATGGGGCAACAGATGAAGAAATCAGAGAAGCAACTGAACTTGCTAATGCGGCTAAATTCATAGATAGATTTCCACAAGGACTTGACACGATTGTCGGCGAGCATGGTACACAGCTCTCTGGGGGTcaaaagcaaagaatcgccatagcaagagcaatTCTGAAAGATCCAAGAATTTTACTCCTGGATGAAGCTACAAGTGCCCTTGATGCGGAGTCTGAGAGAGTGGTGCAAGAAACACTAGACAAAATCATGATAAACCGAACAACTGTCATTGTAGCACACCGCCTTAACACAATAAGGAATGCTGATAGCATTGCTGTTATTCATCAAGGAAGAGTAGTAGAAAATGGTATACATGCTGAGCTCATAAAAGATCCTGATGGAACTTATAGCCAGCTCATTAGATTGCAAGAAATTAACAGGCAGACAGATGGTAAAAATGATTCAGGCAGAATAGAAAACTTTGTAGATTCTGAACGACAATCAAGCCAACGGTTTTCTTTCCCTCAATCTTTAAGTCAGGAATCATCCGGAATAGGAAAAAGCAGTAATCACTCACTCATAATATCAAATGCTATGCCAAATACACTTGATCTCTTGAAAACATCAGGAGGGCCTGAAGCTCTTCCTCCAGCAGTATCACATTCACCTCGAGAAGTCTCATTTCTTCACCTTGCTTATCTTAACAAGCCTGAAATCCCAGTGTTAGTCCTAGGGACTCTAGCAGCCACAGTAACTGGGGCAATACTACCCATTATGGGGCTTCTTATCTCCAACATGATAAATACTTTCTTTGAGCCTGCAGATCAACTCCGTAAAGACTCAAAGTTTTGTGCATTAATATTCCTTGCCCTTGGTGTGGTTGGGTCCATATTTCATCCAATAAGGTCCTATTTTTTTGCTGTAGCTGGTTCCAAGTTGATAAAAAGGGTCCGGCTAATGTGTTTTGAGAAAATTATTCACATGGAAGTAGGCTGGTTTGACAAAATTGAGCATTCAAGTGGATTACTTGGAGCAAGGCTCTCAAATGATGTGGCTTCTATTCGAACTTTTGTTGGGGATGCACTTGGTTTGCTGGTTCAAGATATTGCTACAGTAATTACAGCCTTGGTAATTTCCTTTGAGGCAAACTGGCAGCTTTCTCTCATCATTGTTGTTTTGCTACCTCTATTGTTAGTAAATGGACAAGTGCAAATGGGGTCCATGCAGGGATTCATCACTGATGCTAAGAAACAATATGAGGAAGCAAGTCAAGTAGCGAATGACGCTGTAGGGAATATCAGAACGGTTGCAGCTTTCTGTGCTGAAGGGAAGGTGATGGAGTTATACCAGAAGAAATGTTTAGGACCCATCCAGGCAGGTATAAGGCAAGGTTTAGTCGGTGGAGCAAGTTTCGGGTTATCACTCTTCTTTGTGTTCTCTGTTAATGCATGCAGTTTCTATGCTGGAGCTCAACTTGTTGAGAATGGCAAAACATCAATCTCAGATGTTTTCCGTGTATTTTTCACTCTCACGATGGCAGCTGTAGCAATGTCACAATCTGGCTTCATGGCCCCAGGTGCGACAAAAGCAAAAAGTTCAGTTGCTTCTATATTTGCTATTCTTGACCAGAAATCAAAAATAGACCCCAGTAATGAGTCCGGAATGACGCTGCAAGAGGTGAAGGGAGAGATTGGGTTCCACCATGTTACTTTCAAGTATCCAACCAGGCCTAATGTTCTTGTATTCAGAGATTTTTCCTTGACCATTCATGCAGGAGAGACAGTTGCTCTAGCAGGCGAAAGTGGAAGTGGAAAGTCAACAATAATCTCATTGTTGCAAAGATTTTACGACCCAGATTCAGGTCAGATTACACTGGATGGAACAGAAATCCAAAATCTACAACTTAAATGGTTTAGGCAGCAGATGGGTCTGGTAAGCCAGGAGCCTGTGTTGTTCAATGATACCATCAGAGCCAATATTGCATATGGAAAAGGTGGCAATGCAACAGAAGCTGAAATTATAGCCGCAGCAGAACTGGCAAATGCCCACAATTTCATTAGCAGTTTGCAACAGGGTTATGATACAGTAGTAGGGGAGAGAGGGATTCAACTATCTGGTGGGCAGAAGCAGCGAGTGGCAATTGCAAGAGCCATAGTGAAGAGTCCAAAAATATTACTGCTGGATGAAGCCACGAGTGCACTTGATGCTGAGTCTGAAAGAGTGGTTCAGGATGCACTTGACCAAGTGGCGGTGGACAGAACCACAATTGTGGTGGCCCACAGGTTATCCACCATAAAGGATGCAGATTCAATTGCAGTGGTTGAAAATGGAGTCATTTCAGAGCAAGGAAAGCATCATACTCTGCTTAACATGGGTGGTACCTATGCTTCCTTAGTAGGCTTACACACATCTTAG 3774 0.4181 MAKQQDSKNMLKDKSNKTVPFYKLFSFADSWDYLLMFVGTISAAANGVTKALTNIVMGEAVDAFRGNGNTDVVHEVSKVSLKFALMGAGAFLAAFLQVACWVSTGERQAARIRGLYLKAILRQDISFFDKETNTGEVVGRMSGDTVLIQEAMGEKVGKFIQCVACFLGGIVIAFIKGWLLTVVLLSSIPPLALSGSIMSFAFAKLASRGQAAYSEAATVVERIIGSIRIIASFTGENQAIAQYNQSLAKAYRTAVQDGVAAGLGLSAIRLSINSSYALAVWYGGKMVLEKGYTGGEVMSIFLALFFASMSLGQVSTSLTAFAAGQAAALKMFETINREPDIDAYDTAGRQVDDISGDIEFREVCFSYPSRPDELIFNGFSISISSGTSAALVGKSGSGKSTVISLIERFYDPQAGDVLIDGINLREFQLKWIRQKIGLVNQEPVLFTCSIKENIAYGKDGATDEEIREATELANAAKFIDRFPQGLDTIVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQETLDKIMINRTTVIVAHRLNTIRNADSIAVIHQGRVVENGIHAELIKDPDGTYSQLIRLQEINRQTDGKNDSGRIENFVDSERQSSQRFSFPQSLSQESSGIGKSSNHSLIISNAMPNTLDLLKTSGGPEALPPAVSHSPREVSFLHLAYLNKPEIPVLVLGTLAATVTGAILPIMGLLISNMINTFFEPADQLRKDSKFCALIFLALGVVGSIFHPIRSYFFAVAGSKLIKRVRLMCFEKIIHMEVGWFDKIEHSSGLLGARLSNDVASIRTFVGDALGLLVQDIATVITALVISFEANWQLSLIIVVLLPLLLVNGQVQMGSMQGFITDAKKQYEEASQVANDAVGNIRTVAAFCAEGKVMELYQKKCLGPIQAGIRQGLVGGASFGLSLFFVFSVNACSFYAGAQLVENGKTSISDVFRVFFTLTMAAVAMSQSGFMAPGATKAKSSVASIFAILDQKSKIDPSNESGMTLQEVKGEIGFHHVTFKYPTRPNVLVFRDFSLTIHAGETVALAGESGSGKSTIISLLQRFYDPDSGQITLDGTEIQNLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGNATEAEIIAAAELANAHNFISSLQQGYDTVVGERGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESERVVQDALDQVAVDRTTIVVAHRLSTIKDADSIAVVENGVISEQGKHHTLLNMGGTYASLVGLHTS 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02621 1257 ProSitePatterns ABC transporters family signature. 1157 1171 IPR017871 GO:0005524
Cca11g02621 1257 Gene3D - 1007 1257 IPR027417 -
Cca11g02621 1257 Gene3D ABC transporter type 1, transmembrane domain 82 991 IPR036640 GO:0005524|GO:0016021
Cca11g02621 1257 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1017 1254 IPR003439 GO:0005524
Cca11g02621 1257 CDD ABC_6TM_Pgp_ABCB1_D1_like 36 319 - -
Cca11g02621 1257 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 358 594 IPR003439 GO:0005524
Cca11g02621 1257 SMART AAA_5 1044 1237 IPR003593 -
Cca11g02621 1257 SMART AAA_5 385 571 IPR003593 -
Cca11g02621 1257 Gene3D - 356 610 IPR027417 -
Cca11g02621 1257 CDD ABC_MTABC3_MDL1_MDL2 358 596 - -
Cca11g02621 1257 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 13 1256 IPR039421 -
Cca11g02621 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1006 1254 IPR027417 -
Cca11g02621 1257 CDD ABC_6TM_Pgp_ABCB1_D2_like 685 1000 - -
Cca11g02621 1257 SUPERFAMILY ABC transporter transmembrane region 685 997 IPR036640 GO:0005524|GO:0016021
Cca11g02621 1257 PANTHER TRANSPORTER ABC DOMAIN PROTEIN 13 1256 - -
Cca11g02621 1257 MobiDBLite consensus disorder prediction 617 638 - -
Cca11g02621 1257 SUPERFAMILY ABC transporter transmembrane region 23 342 IPR036640 GO:0005524|GO:0016021
Cca11g02621 1257 CDD ABC_MTABC3_MDL1_MDL2 1017 1252 - -
Cca11g02621 1257 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 696 982 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g02621 1257 Pfam ABC transporter 1036 1185 IPR003439 GO:0005524
Cca11g02621 1257 Pfam ABC transporter 377 525 IPR003439 GO:0005524
Cca11g02621 1257 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 37 323 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g02621 1257 Pfam ABC transporter transmembrane region 36 309 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g02621 1257 Pfam ABC transporter transmembrane region 695 967 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g02621 1257 ProSitePatterns ABC transporters family signature. 497 511 IPR017871 GO:0005524
Cca11g02621 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 596 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02621 Cca-Chr11 53430254 53436579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02621 5 597 Calmodulin-binding Proteins AT2G36910 36.013 1.55e-111 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02621 K05658 - gmx:100798707 2050.4