Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02618 ATGGAAGTGGAGGACTGGGATTTGAGCGCAGAGGACCTCGATTCTCTCGAAAGAGACGCTTTCCAGAAAATTGCTCAGCTGCGCAACCCTTCTGCAACCCCCAAACCCCTTCACCAAACTGTTGCTACTTCATCCCAAGGAGCAAGTACGTCATTGAAACCAGGGACAAGCAACGCTCCATCTGTTGCAGACAAAAACTCAAAAGAGCTGCCGAAGTTTTCGGTAAAATTTTTTCTTCATTCCAGTGGAAATGTTGCTGCGAAGTTTCAGTATGACCAGGTAGTAGTTGCTGCTTTTCGTAGAATCCCCAAGTCTTCTTGGAATGCAAAAGAACGCAGGTTATGGATGTTCCCACTATCTTCCTTGTCCGAAGCAGAAAAGGTACTTGGAGAAATATCTGGTTATAATGTTCAGGTGGAAAACTTAGATTCGTTAGTGCAACGTGCCATTGCAGCAGCATCTGCAGTTCCAGATCTCCAAGATCGGTACCACAAGATCCCTAGTTATATTGAAACAAAGCTATTACCATTTCAGCGAGAAGGTGTTAGGTTTATATTGCAGCATGGAGGACGTGTTCTCTTAGCAGATGAAATGGGGCTTGGGAAAACTTTGCAGGCAATTCACTCTTCATGTGTTCAGGACTCATGGCCTGTTCTCATACTTGCACCGTCTTCGTTACGCTTGCAATGGGCTACTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATTGTTATTGTCTTACCTCAAACTGGTGGATCAAATAGAGGAGGTTTCAATGTAGTATCTTCAAGTGCCAAAAGCAGCATTCGTCTGGATGGACTATTCAACATTATTTCATATGATTTGGTGCCAAAGCTACAGAATATGCTTATAACATGTGACTTTAAGGTTGTGATTGCTGATGAATCACATTATCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTACCCGTCATAAAGAAAGCTCAATATGCATTATTGCTTAGTGGAACACCTGCTTTATCCCGACCAATTGAACTATTCAAACAGCTGGAAGCTTTGTATCCTGATGTATATAGGAACGTTCATGAATATGGTAACCGGTACTGCAAGGGTGGATTTTTTGGAGTTTATCAAGGTGCAAGTAACCATGAAGAGCTGCACAACTTAATGAAGGGAACAGTGATGATTCGCAGGCTTAAAAAGGATGTTCTTTCTCAACTTCCCGTAAAACGCAGGCAACAGGTCTTCCTAGACTTGGCTGACAAGGACATGAAGCAAATTAATTCTTTATTTCGAGAGTTGGAGATGGTAAAAGCCAAAATTAAGGCATCCAAATCACAAGACGAGGCTGAAACACTCAAGTTTACTCAAAAAAATCTTATTAACAAGATATATACTGATTCTGCAGAAGCCAAGATTCCATCTGTTCTTGATTATCTTGGAACAGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAGCCAATGATCGATTCAATACACGAATTTCTTCTTAAGAAAAAAGTGGGTTGCATCCGAATTGATGGACGTACGCCTGCTGCATCCAGGCAACAATTGGTTACCGAGTTTCAGGAAAAAGATGCTATCAAGGCAGCAGTGCTATCTATTAAAGCTGGAGGTGTTGGGTTAACTTTAACTGCCGCCAGCACAGTAATCTTTGCAGAATTGTCTTGGACTCCTGGTGACATAATTCAGGCCGAAGACCGTGCTCATAGAATTGGCCAGGTGTCTTCTGTAAATATATACTACTTGCTAGCAAATGACACAGTTGATGACATCATATGGGACGTAGTGCAAAACAAACTGGACAATTTGGGGCAGATGTTAGATGGCCATGAGAATGCCTTACAGGTCTCCGCCAAGGCCTCAGCTAGTCTGCCAGCAAATAGTCCTTCAAAGCAGAAAACTCTAGATCAATTTAAACTAACCATTGAAGCGGTGCTCAAAGTGGAGAATAATCGCATGTTGGCACTCTTGCTCGTTCCATGA 2013 0.4218 MEVEDWDLSAEDLDSLERDAFQKIAQLRNPSATPKPLHQTVATSSQGASTSLKPGTSNAPSVADKNSKELPKFSVKFFLHSSGNVAAKFQYDQVVVAAFRRIPKSSWNAKERRLWMFPLSSLSEAEKVLGEISGYNVQVENLDSLVQRAIAAASAVPDLQDRYHKIPSYIETKLLPFQREGVRFILQHGGRVLLADEMGLGKTLQAIHSSCVQDSWPVLILAPSSLRLQWATMIQQWLNIPSSDIVIVLPQTGGSNRGGFNVVSSSAKSSIRLDGLFNIISYDLVPKLQNMLITCDFKVVIADESHYLKNAQAKRTTASLPVIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYRNVHEYGNRYCKGGFFGVYQGASNHEELHNLMKGTVMIRRLKKDVLSQLPVKRRQQVFLDLADKDMKQINSLFRELEMVKAKIKASKSQDEAETLKFTQKNLINKIYTDSAEAKIPSVLDYLGTVIEAGCKFLIFAHHQPMIDSIHEFLLKKKVGCIRIDGRTPAASRQQLVTEFQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDIIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQNKLDNLGQMLDGHENALQVSAKASASLPANSPSKQKTLDQFKLTIEAVLKVENNRMLALLLVP 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02618 670 Pfam Helicase conserved C-terminal domain 480 582 IPR001650 -
Cca11g02618 670 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 649 - -
Cca11g02618 670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 296 625 IPR027417 -
Cca11g02618 670 ProSiteProfiles HARP domain profile. 66 143 IPR010003 -
Cca11g02618 670 CDD SF2_C_SNF 469 593 - -
Cca11g02618 670 MobiDBLite consensus disorder prediction 27 65 - -
Cca11g02618 670 CDD DEXHc_HARP_SMARCAL1 174 396 - -
Cca11g02618 670 Coils Coil 425 445 - -
Cca11g02618 670 Gene3D - 144 417 IPR038718 -
Cca11g02618 670 SMART ultradead3 170 362 IPR014001 -
Cca11g02618 670 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 474 625 IPR001650 -
Cca11g02618 670 Gene3D - 418 664 IPR027417 -
Cca11g02618 670 SMART helicmild6 499 582 IPR001650 -
Cca11g02618 670 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 183 354 IPR014001 -
Cca11g02618 670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 407 IPR027417 -
Cca11g02618 670 Pfam SNF2-related domain 192 453 IPR000330 GO:0005524|GO:0140658
Cca11g02618 670 MobiDBLite consensus disorder prediction 27 64 - -
Cca11g02618 670 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 4 649 IPR030101 GO:0006281|GO:0031297|GO:0036310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02618 Cca-Chr11 53406922 53416481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02618 440 602 RAD5 or RAD16-like Gene Family AT1G05120 31.548 1.83e-16 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca11g02618 SNF2_N 7.4e-26 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02618 K14440 - gmx:100797654 1115.91