Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02609 ATGGGAACATTGAAACAAATTGGTGCTCCTCAAACACAatcatcatcatcctcatcttcttcCATTGATAGCAACAACCACCCTTCTAGGACTCCACCACCACCCTCTTCACCTTCATCAAGCGTATGCAGAAACAGAACTGATTTGAGCACTGATCTCAGACTTGGCCTTAGCATCTCTCCTTCTTCTCAATCTGAATCACCCTTCAATTCAACACCGAGGGAAGAAAGTTTTGATTGGCCACCAATTAAGTCCATATTGAGGAGCACCCTTGTGGGGAAACAAAGCCATCTGAGCCAAAGACCCTCTTTATTTGTCAAAGTCTACATGGAAGGCATCCCCATAGGAAGAAAATTGAATCTGTTGGCACATTATAGCTATGATGGACTTGTGAAAACTCTTGGCCACATGTTTAGGACCATAATTCTCTGTCCTAACTCTCAACCTCTTAATTCTGGGAGTTTTCACGTGCTAACTTATGAGGATCAAGAAGGGGACTGGATGATGGTTGGAGATGTGCCGTGGGAGATGTTCTTGAACAGTGTGAAGAGGCTGAAGATCACGAGAGCTGACAGATGCTAG 582 0.4261 MGTLKQIGAPQTQSSSSSSSSIDSNNHPSRTPPPPSSPSSSVCRNRTDLSTDLRLGLSISPSSQSESPFNSTPREESFDWPPIKSILRSTLVGKQSHLSQRPSLFVKVYMEGIPIGRKLNLLAHYSYDGLVKTLGHMFRTIILCPNSQPLNSGSFHVLTYEDQEGDWMMVGDVPWEMFLNSVKRLKITRADRC 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02609 193 PANTHER AUXIN-RESPONSIVE PROTEIN IAA31 16 193 - -
Cca11g02609 193 SUPERFAMILY CAD & PB1 domains 96 187 - -
Cca11g02609 193 MobiDBLite consensus disorder prediction 1 78 - -
Cca11g02609 193 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 193 IPR003311 GO:0005634|GO:0006355
Cca11g02609 193 Gene3D - 97 193 - -
Cca11g02609 193 MobiDBLite consensus disorder prediction 40 74 - -
Cca11g02609 193 MobiDBLite consensus disorder prediction 1 27 - -
Cca11g02609 193 Pfam AUX/IAA family 70 189 IPR033389 -
Cca11g02609 193 ProSiteProfiles PB1 domain profile. 103 192 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02609 Cca-Chr11 53330602 53331650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02609 2 193 B3 DNA Binding Superfamily AT3G61830 28.205 1.07e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Cca11g02609 AUX_IAA 3.2e-33 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02609 K14484 - gmx:100818083 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02609 11 53330602 53331650 Cca11g02609 11 53330602 53331650 ECH