Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02607 ATGTGCCAAAGAAGCAAGTGTGGTGGAGGCATGAAGCTGCTGAGGATGTTTGTGTTTGTGGGGTTGGTGGTTGTGAAATGGGTGGAAGGCTTTGAGAATGCTAATGTGACAGACATGGACGTGCAATATGTCAGTGGAAGAGGTTACTACAACAGACCTTTGCTGGTTGGTCTTACTCTTATTAATGGTGCTGCTGCTAAAGGAGCTGTTTGCCTGGATGGATCTTTACCAGGTTACCACTTCCACCGTGGATATGGTTCAGGATCAAACAGTTGGCTCATACAATTGGAGGGAGGAGGCTGGTGTGGAACTATTAAAAATTGTGTTTATAGTAAGAAAACACGTCATGGTTCATCATTGTATATGGAAAAACAAATACCATTTATTGGGATATTGAGCAACAAAGCTGAGGAAAATCCAGATTTTTTCAATTGGAATAGAATAAAAATCCGTTATTGTGACGGTGCATCATTTAGTGGGAACAGTCAAAATGTGAGAGCAGGGTTGTATTTCAGAGGGCAACGCATTTGGCAAGCTGCTATGGAAGATTTGATGTCAAAAGGGATGCGCTATGCCAAACAGGCTCTTCTATCCGGATGTTCTGCAGGAGGATTAGCTTCTATTATACATTGTGATGAATTTAGGGAATTGTTTCCTAGAACCACAAGAGTTAAATGCTTAAGTGATGCTGGATTATTCCTTGATTCCGTTGATGTATCTGGCCGTCGCAGCTTAAGGAATTTGTTTGGAAGTGTGGTGACCTTACAGGGAGTTCAAAAGAGCCTTCCAAGGAGTTGTACCAGTCGCCTCAATCCAATTTTGTGCTATTTTCCTCAGCACTTAATTGCCAGTGTTAGGACACCACTGTTTCTTCTCAATGCAGCTTATGATACTTGGCAGGTTCAAGCCAGTCTTGCTCCACCATCTGCTGACTACCGATGGAACTGGTTTGAATGCAGAAAAAATTATGCACGTTGCAGTGCACCACAGTTACAGTATCTTCAAGGTTTTCGAAATCAGATGCTTAGAGCTACAAGAGGCTTCTCAAGGTCTTACAAAAACGGGCTATTCATAAATTCATGTTTCGCTCATTGCCAATCAGAAAGACAGGATACGTGGTTTGCTAGCAATTCTCCTCGCATTGGAAATAGAGGGATCGCAGAGTCTGTTGGGAACTGGTATTTTGACCGAGTTAGAGTCCAAGCCATTGGTTGCGCTTACCCTTGTGACAAAACCTGCCATAATCTGGTTTTCAAGTGA 1260 0.427 MCQRSKCGGGMKLLRMFVFVGLVVVKWVEGFENANVTDMDVQYVSGRGYYNRPLLVGLTLINGAAAKGAVCLDGSLPGYHFHRGYGSGSNSWLIQLEGGGWCGTIKNCVYSKKTRHGSSLYMEKQIPFIGILSNKAEENPDFFNWNRIKIRYCDGASFSGNSQNVRAGLYFRGQRIWQAAMEDLMSKGMRYAKQALLSGCSAGGLASIIHCDEFRELFPRTTRVKCLSDAGLFLDSVDVSGRRSLRNLFGSVVTLQGVQKSLPRSCTSRLNPILCYFPQHLIASVRTPLFLLNAAYDTWQVQASLAPPSADYRWNWFECRKNYARCSAPQLQYLQGFRNQMLRATRGFSRSYKNGLFINSCFAHCQSERQDTWFASNSPRIGNRGIAESVGNWYFDRVRVQAIGCAYPCDKTCHNLVFK 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02607 419 PANTHER NOTUM-RELATED 17 418 IPR004963 GO:0016787
Cca11g02607 419 Pfam Pectinacetylesterase 54 398 IPR004963 GO:0016787
Cca11g02607 419 PANTHER PECTIN ACETYLESTERASE 17 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02607 Cca-Chr11 53313199 53319663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02607 55 419 Carbohydrate Esterase AT1G57590 69.589 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02607 K19882 - gmx:100791571 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02607 11 53313199 53319663 Cca11g02607 11 53313199 53319663 ECH
Cca11g02607 11 53313199 53319663 Cca03g02708 03 48391194 48395333 ECH
Cca11g02607 11 53313199 53319663 Cca02g01367 02 32129817 32134841 ECH