Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02601 ATGGCAACGCTTAACGCCTCATGCCCAGCACCCATGAAGGCCACCTCCAACGGCGCCTTTCAACACGAGAACCCTCTCGACTATGCACTTCCTCTTTTAATTCTTCAGATCTGCTTGGTCGTTACTTTTACCAGATTCATTGCATTCCTTTGCACACCCCTTAGACAACCCAGAGTCATTGCTGAGATCATCGGAGGAATACTGCTTGGACCATCTGCAATCGGACGAAGCGAGAAGTTCCTAAACACAGTTTTCCCAAAGAAAAGCATAACAGTTCTTGACACGATAGCCAACATTGGGCTATTGTTCTTCTTGTTTCTAGTGGGTCTTGAGCTTGACATGCGTGCCATTCGTCGTACTGGTCATAAGGCCTTAGGCATTGCCCTTTCTGGGATCACAGTGCCTTTTGTTCTTGGCATTGGCACTTCTTTTGCTCTTAGAGCCACCGTGTCCAAAGGTGCTGAGCCAGTTCCCTTTCTTGTCTTCATGGGTGTTGCTCTCTCAATCACTGCCTTCCCTGTCCTTGCTAGGATCCTGGCTGAGCTCAAACTCCTCACCACTGATGTTGGTCGCTTAGCCATGTCAGCTGCTGCTGTCAATGATGTTGCAGCTTGGATTCTTCTTGCTCTTGCCATAGCCCTTACTGGCTCCAACGCATCCCCCTATGTTCCAATTTGGGTCTTGCTCTCGGGTGCTGCTTTTATTCTCTTTGCTGTCTTTGCCATCAGGCCCTTGCTAGTAGCTATGGCTAACCGTTCCCCGGAGGGTGAGCCAGTGAAGGAGTTGTACATATGCATCACATTGACAATAGTTTTGGCTTGTAGTTTTGCCACAGATACTATTGGAATTCATGCCCTCTTCGGGGCTTTTGTGGTGGGCACAATTATGCCCAAAGAGGGTTCCTTTTCCAGGGTCTTGATTGAAAAGATAGAAGACCTGGTTTCTGGCCTTTTCCTGCCACTTTACTTTGTGTCTAGCGGTTTGAAGACCAATGTGACAACTATTAAGGGAGGGCTTTCTTGGGCAATGTTGGTGCTTGTTATATTCAATGCTTGCTTTGGGAAGATTATTGGCACAATCGTTGTGTCATTGATATGCAAGATACCTTCTAGAGAAGCACTGGCACTTGGATTTCTCATGAACACAAAGGGTTTGGTAGAGCTCATTGTTCTCAACATTGGGAAGGATCGTAAGGTGTTGAATGACCAAGCATTTGCCATTTGTGTTCTCATGGCATTGTTTACCACCTTCATCACCACCCCAATAGTGATGGCTGTATATAAACCTGCTAGGAGAGGAGCACCTTACAAGCACAAAACAATTCAGCGCAAAGCTCCTGACTCTGAGCTCAGAATGCTAGCATGCTTCCACACCAGCCGCAACATTCCTACGTTGATCAATCTGATAGAGTCTTCCCGAGGAATTCGAAAGAGAGGAAAGCTTTGCATATATGCCATGCACTTGATGGAACTTTCAGAGCGATCTTCAGCAATCACAATGGTTCACAAGGCACGCAAGAATGGCATGCCCTTTTGGAACAAGAAAGAGGATGACAAAGATCAAATGGTCATTGCTTTTCAGACTTATGAAAAACTGAGCAGTGTGAATGTGCGTTCTATGACAGCAATCTCTGCTCTCAGTAGCATCCATGAGGATATATGTACTAGTGCTCATCAAAAGCGTGCAGCCATGATTATTCTTCCATTCCACAAACACCAACGTATGGATGGATCAATGGAGTCACTAGGACATCAATTCCAAGTGATAAATCAACTTGTGCTGAGCCATGCTCCTTGCTCAGTGGGAATTTTGGTTGATCGGGGTTTTGGAGGGACAAGCCAAGTGCAAGCTAGTGACGTGTCTTATAAGATAGTTGTACCCTTCTTTGGAGGACGTGATGATCGTGAAGCACTTTGTTATGGTATGAGAATGGCTGAGCACCCGGGGATTTTGCTCAATGTGGTGAAGTTTGTGCCTCCACCTGGGAAATCATTGGCCTTTGGTGCTAAATTGGTTGGGGTGTCATCAAACGAGGACAAGAAAGCAATAGATGTGGTTGGTGACAGTGTTGACGATAAACAACAAGATGATCAATTGTGGAGTGAGTTTTTAAATGCATGCAGCAACAACCAAGAGTCAATGAAGCATGTGCAAAAGCTAGTGGAAAGCAAAGGTGATATTGAGGCAGCACTACAGGAAATGAATAAGAGCAATCTAATATTGGTTGGTAGAATGCCCGCAATACCACCTTTGGTTAGCAGAAGTGATTGTCCAGAGCTTGGACCTGTTGGAAGCTACATGGCTTCTTCAGGTTTCTCCAGTGTTACATCAATTATGGTAATTCAACAATATAATCCCTCAACTGACATTCATCCGCTAGTGATGGAGGAATCTGATTACCCAGATATGTCAAATTAA 2418 0.4524 MATLNASCPAPMKATSNGAFQHENPLDYALPLLILQICLVVTFTRFIAFLCTPLRQPRVIAEIIGGILLGPSAIGRSEKFLNTVFPKKSITVLDTIANIGLLFFLFLVGLELDMRAIRRTGHKALGIALSGITVPFVLGIGTSFALRATVSKGAEPVPFLVFMGVALSITAFPVLARILAELKLLTTDVGRLAMSAAAVNDVAAWILLALAIALTGSNASPYVPIWVLLSGAAFILFAVFAIRPLLVAMANRSPEGEPVKELYICITLTIVLACSFATDTIGIHALFGAFVVGTIMPKEGSFSRVLIEKIEDLVSGLFLPLYFVSSGLKTNVTTIKGGLSWAMLVLVIFNACFGKIIGTIVVSLICKIPSREALALGFLMNTKGLVELIVLNIGKDRKVLNDQAFAICVLMALFTTFITTPIVMAVYKPARRGAPYKHKTIQRKAPDSELRMLACFHTSRNIPTLINLIESSRGIRKRGKLCIYAMHLMELSERSSAITMVHKARKNGMPFWNKKEDDKDQMVIAFQTYEKLSSVNVRSMTAISALSSIHEDICTSAHQKRAAMIILPFHKHQRMDGSMESLGHQFQVINQLVLSHAPCSVGILVDRGFGGTSQVQASDVSYKIVVPFFGGRDDREALCYGMRMAEHPGILLNVVKFVPPPGKSLAFGAKLVGVSSNEDKKAIDVVGDSVDDKQQDDQLWSEFLNACSNNQESMKHVQKLVESKGDIEAALQEMNKSNLILVGRMPAIPPLVSRSDCPELGPVGSYMASSGFSSVTSIMVIQQYNPSTDIHPLVMEESDYPDMSN 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02601 805 PANTHER CATION/H + ANTIPORTER 1 801 - -
Cca11g02601 805 PANTHER CATION/H+ EXCHANGER 3 1 801 - -
Cca11g02601 805 Pfam Sodium/hydrogen exchanger family 38 422 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cca11g02601 805 Gene3D - 32 434 IPR038770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02601 Cca-Chr11 53269890 53273885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02601 1 805 Antiporter Super Family AT3G17630 68.154 0.0 1103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02601 - - gmx:100780382 1430.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02601 11 53269890 53273885 Cca11g02601 11 53269890 53273885 ECH