Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02599 ATGGCTGCTGTCAACCCTTATGTTGATAACATGAGTGATGATATTGATGGACCACTCATGCATTTCTCTGCTACTCGGCCAGTGGCAGTGGCTTCATCTGGACAGAATGCAGTGACTCCTAGTCCAACTCAATTTTCCATCCTCTATAAGGGGAATATGTGTATCTATGATGGAATTCCTGCAGGAAAGGTGCGTGAAATAATGTTGATTGCTTCTAGCTCTGCTAAGTCTGCTGAAATGAAGAGTGGGATCTCCTTCCCTTCACTCATTCTCACAACCACAAACCCTTCTTCGCCACAGGGAAACTCTACTAATTTATCTTCATCCCAGTTTCCTGCAAAGAAAAGTTCCATTTGCAGGCTGCAAGAATTTCCATTAGCACGCCGACAATCACTTCAAAGGTTTCTTGAGAAGCGAAGAAAGAGGTTAGGTACCAAAACCCCTTATGCCTCCCCAGCAACAAAAGCTGTTGACAACATAGACCATAATTTATGTGGTCACAAGACGCCAGATTTTGGTTCCTTGAACTATGAGAGGAGGGATTTCAACCCTGTGTTGCTTCCTCTTTGA 570 0.4386 MAAVNPYVDNMSDDIDGPLMHFSATRPVAVASSGQNAVTPSPTQFSILYKGNMCIYDGIPAGKVREIMLIASSSAKSAEMKSGISFPSLILTTTNPSSPQGNSTNLSSSQFPAKKSSICRLQEFPLARRQSLQRFLEKRRKRLGTKTPYASPATKAVDNIDHNLCGHKTPDFGSLNYERRDFNPVLLPL 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02599 189 ProSiteProfiles Tify domain profile. 38 73 IPR010399 -
Cca11g02599 189 SMART tify_2 38 73 IPR010399 -
Cca11g02599 189 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 9 167 IPR040390 -
Cca11g02599 189 Pfam tify domain 40 72 IPR010399 -
Cca11g02599 189 PANTHER DIVERGENT CCT MOTIF PROTEIN 9 167 - -
Cca11g02599 189 Pfam Jas motif 125 149 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02599 Cca-Chr11 53255750 53258810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02599 42 158 Tify Gene Family AT5G20900 39.844 5.42e-19 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Cca11g02599 tify 2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02599 K13464 - gmx:100306282 206.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02599 11 53255750 53258810 Cca08g01311 08 39449468 39455120 PCT