Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02598 ATGTCAACAGCAGAACCTCCTCCGTTCCAAGAAGCAGCGCGATGCGTTGTCTGCAATTGCGGTTTCAACACCTTCAGGAGAAGGCATCACTGTCGATCCTGTGGGAGAACATTGTGCAGTGAACATTCATCAAATCAAATGGCTTTGCCACAATTTGGCATTTACTCAAATGTCCGAGTATGCACGGATTGTTTCAACAACACGCGGTCTGGGAAGGATGTACCACAGACTTCTTCAGATGGAGTAAACAGTGCGACAGATACAATTTCTAAATTAGACATTAATGCAAATGCTGATTCAAAGTCCATACCAACTGGAGAGAATATGGTTGTATCAAGCATTAGAGAGTGTAAATGTGGAATGCCACTTTGCATTTGTGAAGCACCAGCCCCTTCCTCTGGTGCACTCCCTGAGCAGAAGAAACCCAATCCAGTCATTGCAGCTCCATCAAATCCTAAACCTAAGAAGACAGATGCTGTTCCGAAAAATAGAACCTCCAGTTCAACTAGCAAATTTAATTCTATGTTTAATGCTGGTCATGTAACAAATGGCACCTCAGACAGACCCCAGATTGATTATGAAGTAAATGGAGAGGGTTTGAGAGAAGCAATAAAGAATGGTGACATTGCGGCTGTTAAGAAACTTCTTAATGAGGGTGTGGATGCAAATTACAGGGACAAGCAAGGACTGTCTTTATTACATTTGGCTGCAGTCTTCAATCAAACAGATATAGTTTTCATTCTCATGGATTCGGGGGCAAGCCTGGAGTACAAGAATGCACAAGGAGAAACACCTTTAGATTGTGCACCAGCTACCTTGCAATACAAAATGCGAAAGAAGATGGAAGAAGGTGGACCGATCCAAAGAAATTGA 873 0.4273 MSTAEPPPFQEAARCVVCNCGFNTFRRRHHCRSCGRTLCSEHSSNQMALPQFGIYSNVRVCTDCFNNTRSGKDVPQTSSDGVNSATDTISKLDINANADSKSIPTGENMVVSSIRECKCGMPLCICEAPAPSSGALPEQKKPNPVIAAPSNPKPKKTDAVPKNRTSSSTSKFNSMFNAGHVTNGTSDRPQIDYEVNGEGLREAIKNGDIAAVKKLLNEGVDANYRDKQGLSLLHLAAVFNQTDIVFILMDSGASLEYKNAQGETPLDCAPATLQYKMRKKMEEGGPIQRN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02598 290 ProSiteProfiles Ankyrin repeat region circular profile. 228 259 - -
Cca11g02598 290 SMART fyve_4 1 70 IPR000306 GO:0046872
Cca11g02598 290 SMART ANK_2a 195 224 IPR002110 GO:0005515
Cca11g02598 290 SMART ANK_2a 228 257 IPR002110 GO:0005515
Cca11g02598 290 MobiDBLite consensus disorder prediction 161 190 - -
Cca11g02598 290 Pfam Ankyrin repeats (3 copies) 202 269 IPR002110 GO:0005515
Cca11g02598 290 SUPERFAMILY Ankyrin repeat 200 270 IPR036770 -
Cca11g02598 290 ProSiteProfiles Ankyrin repeat profile. 228 260 IPR002110 GO:0005515
Cca11g02598 290 SUPERFAMILY FYVE/PHD zinc finger 9 75 IPR011011 -
Cca11g02598 290 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 9 69 IPR017455 -
Cca11g02598 290 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 3 284 - -
Cca11g02598 290 ProSiteProfiles Ankyrin repeat profile. 200 227 IPR002110 GO:0005515
Cca11g02598 290 Pfam FYVE zinc finger 10 68 IPR000306 GO:0046872
Cca11g02598 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 72 IPR013083 -
Cca11g02598 290 MobiDBLite consensus disorder prediction 134 190 - -
Cca11g02598 290 CDD FYVE_scVPS27p_like 8 65 - -
Cca11g02598 290 Gene3D - 164 285 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02598 207 285 MAP Kinase Kinase Kinase AT3G58760 35.443 4.74e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02598 - - gmx:100814367 531.946