Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02591 ATGGCTATTCCTTCACTAAAGAAGGCACGAAAAAAGAGCCTCTGGTTGGTCCTCTTTCTGGCACTCTGCACCCCATTGACCGACGCTCACACCGATTTCGTGGGTTCAGCCTGCCTCAAAGTTTCCCCCACCAAATTCCTCGACTCACTCACCCAAGTCATCGCTGTCATACGACAACTCGCATCCATTCTCTCACGCTTCACCTCTCACTTCGCCGACTTCCGCCTCGCCACCGCCGTCTCCGACTGCCTCGACCTCCTCGACCTCTCCTCCGAAGTCCTCTCCTGGTCCCTCTCCGCCACACACAACCCCACAGGGAAGCATAACAGCACGGGGAACCTGAGCTCCGATTTGAGGACATGGCTCAGTGCGGCACTCGCGCTTCCCGAGACGTGCATGGAGGGATTAGAAGGCACGAACGGCATTGTGAAGGGTTTGGTGTCTGGCGGCGTAGGGCAAGTGGTGTCGTTGGTGGAGCAGCTTCTTGCGCAGGTGCTTCCCGCAGAGGATGAATTTGGAGACGGCAAGGGGAAGGGGGAATTTCCTTCGTGGGTTAGGCCTAACGATAGGAAGCTTCTGCAAGCGAGTGGAGTGGCTCTGGCTCCTGATGCTGTTGTGGCTGCGGATCGGAGCGGCAACTACGCCACCATCACTGATGCGGTGCTTGCGGCACCGGATTACAGCATGAAACGGTTTGTCATTTATATAAAGAAGGGGGTTTACGTAGAGAACGTCGAGATCAAGAAGAAGAAATGGAATATCATGATCGTTGGAGATGGGATAGATGCCACCGTTATTTCCGGTAACCGGAGTTTCATCGACGGTTGGACCACTTTCCGATCACCTACATTCGCGGTGAGTGGCAGAGGATTCATAGCAAGAGACATTTCCTTTGAGAACACGGCAGGGCCGGAGAAGCACCAAGCAGTGGCACTAAGATCAGACTCTGACCTCTCCGTGTTCTACCGATGTGGGATTTCGGGTTACCAAGACAGCCTATACACCCACACGATGCGCCAATTCTTCAGAGAATGCAGAATCAGAGGCACAGTGGATTTCATCTTTGGGGACGCCACTGCCATGTTCCAAAACTGCGCAATAGAGGCCAAGAAAGGGTTGCCAAATCAGAAGAACACGATCACAGCTCACGGAAGAAAAGACCCAAATGAACCAACCGGTTTCTCCTTCCAATTCTGCAATATCAGTGCAGATTCGGACCTTGTAGGGTCAGTTAGCACCAGGCAAACGTACCTGGGAAGACCATGGAAGAGTTATTCGAGAACCGTTTTCATGCAGTCGTACATGAGTGAGGTGATAAGAGCAGAAGGGTGGTTGGAGTGGAATGGGAACTTTGCATTGGACACGTTGTACTATGCTGAGTACATGAACACTGGACCAGGTGCAGGAGTGGCTAACCGTGTCAAGTGGCCAGGGTACCATGCATTGAATGATTCAAGTGAGGCTAGTAACTTCACAGTCACTCAATTTATTGAAGGGAATTTATGGTTGCCTTCTACCGGAGTAACGTATACCGCTGGATTCACGGCTTAA 1551 0.521 MAIPSLKKARKKSLWLVLFLALCTPLTDAHTDFVGSACLKVSPTKFLDSLTQVIAVIRQLASILSRFTSHFADFRLATAVSDCLDLLDLSSEVLSWSLSATHNPTGKHNSTGNLSSDLRTWLSAALALPETCMEGLEGTNGIVKGLVSGGVGQVVSLVEQLLAQVLPAEDEFGDGKGKGEFPSWVRPNDRKLLQASGVALAPDAVVAADRSGNYATITDAVLAAPDYSMKRFVIYIKKGVYVENVEIKKKKWNIMIVGDGIDATVISGNRSFIDGWTTFRSPTFAVSGRGFIARDISFENTAGPEKHQAVALRSDSDLSVFYRCGISGYQDSLYTHTMRQFFRECRIRGTVDFIFGDATAMFQNCAIEAKKGLPNQKNTITAHGRKDPNEPTGFSFQFCNISADSDLVGSVSTRQTYLGRPWKSYSRTVFMQSYMSEVIRAEGWLEWNGNFALDTLYYAEYMNTGPGAGVANRVKWPGYHALNDSSEASNFTVTQFIEGNLWLPSTGVTYTAGFTA 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02591 516 Pfam Plant invertase/pectin methylesterase inhibitor 39 153 IPR006501 GO:0004857
Cca11g02591 516 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
Cca11g02591 516 SUPERFAMILY Pectin lyase-like 198 513 IPR011050 -
Cca11g02591 516 Gene3D - 197 514 IPR012334 -
Cca11g02591 516 SMART PMEI_2 29 164 IPR006501 GO:0004857
Cca11g02591 516 ProSitePatterns Pectinesterase signature 1. 228 247 IPR018040 -
Cca11g02591 516 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 166 IPR035513 -
Cca11g02591 516 CDD PMEI-like_4 16 165 - -
Cca11g02591 516 PANTHER PECTINESTERASE 175 514 - -
Cca11g02591 516 PANTHER PECTINESTERASE 42 171 - -
Cca11g02591 516 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 42 171 - -
Cca11g02591 516 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 175 514 - -
Cca11g02591 516 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 159 IPR035513 -
Cca11g02591 516 Pfam Pectinesterase 203 500 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02591 Cca-Chr11 53167030 53170702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02591 16 516 Carbohydrate Esterase AT3G43270 62.840 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02591 K01051 - gmx:100814987 813.913