Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02590 ATGGCTAAACTTTTCCTCCTTCTCTTAACAATCTTCTTCTCACACACTATAGCTGTCACAACCCCAACAATGCATGCAAAACTCTCTTCCATAAACACAACCAAATCCCACCCTGAAGTTTCCTTCAATTCATCTAAACTTTCCATCTCAATAAACATAAATCCAAACATCATCAACACCCTTCTTCAGTCCCTCCAAGAAGCAATATCCGAAGCCACAAAACTATCTGATCTATTAAACAATGCTGGACACTCAAGCATCATAGAGAACAAAATAGGAGCAGTTCAAGACTGTAGAGAGCTTCAACAATCCACCTTAGCTTCCTTGAAACGATCACTATCAGGGGTCCGCTCTCAAGACACCAGAAAACTAGTTGATGCAAGAACCTACCTCAGTGCAGCACTCACCAACAAGGACACATGTCTAGAAAGCTTAGATTCTGCCTCAGGTACCCTTAAGCCTGTTCTGGTGAATTCTGTGATTGACTCTTACAAGCATGTCAGTGACTCTCTTTCAATTCTCCCTAAGCCTGAGATGAAGGCTTCCAAAGGACGCAAGAACCGGCGTTTGTTGTGGCTGTTGAGGAAAAACCATCGCATCTTGCAAAGCAATGATGGAGTGATTGTTGTGGCAAAAGATGGAACGGGGAACTTTAGCACCATCACTGAGGCTATCAGTTTTGCTCCAAATAACAGCGTTGGTAGGACAGTGATCTATGTCAAAGAAGGGACCTACGAGGAGAATGTTGAAATCCCAAGTTATAAGACTAATATTGTTCTGCTTGGCGATGGAAAGGATGCCACTGTTATTACCAGCAACAGAAGTGTCATTGATGGCTGGACCACTTTCAGATCTGCAACTGTAGCGGTCTCTGGTGAGGGCTTTCTAGCACGTGATATAGCTTTTGAGAACAAGGCAGGGCCAGAGAAGCATCAAGCAGTGGCCTTGAGAGTGAATGCAGACTTCACTGCTTTTTTCAGGTGTGCCATGTATGGTTTCCAAGACACTCTGTATGTCCACTCCTTTAGACAGTTCTACAGGGAGTGTGGCATTTATGGGACCATAGATTTCATATTTGGCAATGCAGCAGTGGTTTTACAAGCAAGCAACATTGTGTCTATGATGCCATTGCCTGGCCAATTCACTGTTATCACTGCACAGTCCAGAGATTCCCCTGATGAGGACACTGGCATCTCAATCCAAAACTGCTCAATTCTTGCCACCAAAGATTTGTACTCCAATTCTGCTAGTGTCAAGAGCTACCTTGGGAGGCCATGGAGGGTATATTCTAGAACTGTTTTCCTCGAGTCCTACATTGATGTGTTTATTGATCCAAAGGGGTGGACTGAGTGGTCTGTTGATGAAGGCTTGGACACTTTGTATTATGGAGAGTATGCAAATTATGGACCTGGTTCAGGCACGGATAACCGAGTCACGTGGGAGGGGTATCATTTGATGGATTACAACAGTGCCTACAATTTCTCAGTTTCAGAGTTTATAATTGGTGGTGCTTGGCTTGGGTCTACTTCATTTCCTTATGATGATGGGATCTAA 1554 0.4389 MAKLFLLLLTIFFSHTIAVTTPTMHAKLSSINTTKSHPEVSFNSSKLSISININPNIINTLLQSLQEAISEATKLSDLLNNAGHSSIIENKIGAVQDCRELQQSTLASLKRSLSGVRSQDTRKLVDARTYLSAALTNKDTCLESLDSASGTLKPVLVNSVIDSYKHVSDSLSILPKPEMKASKGRKNRRLLWLLRKNHRILQSNDGVIVVAKDGTGNFSTITEAISFAPNNSVGRTVIYVKEGTYEENVEIPSYKTNIVLLGDGKDATVITSNRSVIDGWTTFRSATVAVSGEGFLARDIAFENKAGPEKHQAVALRVNADFTAFFRCAMYGFQDTLYVHSFRQFYRECGIYGTIDFIFGNAAVVLQASNIVSMMPLPGQFTVITAQSRDSPDEDTGISIQNCSILATKDLYSNSASVKSYLGRPWRVYSRTVFLESYIDVFIDPKGWTEWSVDEGLDTLYYGEYANYGPGSGTDNRVTWEGYHLMDYNSAYNFSVSEFIIGGAWLGSTSFPYDDGI 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02590 517 PANTHER PECTINESTERASE 4 516 - -
Cca11g02590 517 SUPERFAMILY Pectin lyase-like 205 514 IPR011050 -
Cca11g02590 517 PANTHER PECTINESTERASE 4 516 - -
Cca11g02590 517 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 174 IPR035513 -
Cca11g02590 517 Pfam Pectinesterase 208 502 IPR000070 GO:0030599|GO:0042545
Cca11g02590 517 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 176 IPR035513 -
Cca11g02590 517 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Cca11g02590 517 Coils Coil 62 82 - -
Cca11g02590 517 CDD PMEI-like_3 37 173 - -
Cca11g02590 517 Gene3D - 203 517 IPR012334 -
Cca11g02590 517 SMART PMEI_2 22 173 IPR006501 GO:0004857
Cca11g02590 517 Pfam Plant invertase/pectin methylesterase inhibitor 64 173 IPR006501 GO:0004857
Cca11g02590 517 TIGRFAM PME_inhib: pectinesterase inhibitor domain 5 174 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02590 Cca-Chr11 53159456 53162101 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02590 13 517 Carbohydrate Esterase AT2G26440 62.548 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02590 - K01051 pvu:PHAVU_003G126600g 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02590 11 53159456 53162101 Cca11g02590 11 53159456 53162101 ECH