Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02589 ATGGCGTTCCAAGACTTTGACCTCATCTCAGAGCGGCGAAGAAATGAGAAGAGGCAAAAGATGAGGAAGAGGATCATGATCGGCGTGGTTTCTTCCGTTGTCCTGGTCGGCATGATAGGTGCAGTACTCTTCATCGTTGTGAAAAACGACGACACCGGCAATAGTAATAATAAAAATAGCAAGGAAAGCGGCAAGGCACAGAAGAACCATACACCAACAAACACCGCCAACAACCCGCACGTGACAGTATCCGATAAGATTGTGAAACTGGTGTGTAGCACCGCGGATTACAAAGACAGATGCGAAGAGCCTCTTAACAAGGCGATCCAGAACGACCCCAAACTCTCACAACCCAAAGAACTTCTCAAGCTATACGTGAAACTCGCGGAGGACGAGATCAACAAGGCCTTCAACAAAACCGTTTCCATGAACTTCCAATCCGAGGAAGAGAAAGGAGCGTTCGAAGATTGCAAGAAGCTCTTCGAGGATGCTAAGGATGACATAGCAACGTCAATCTCCCATCTCGCGCAAACCGAGGTGAAGAAGGTTTCTGAAAAGATTCCTGACTTCAACAGCTGGCTCAGCGCTGTGATCACATTCCAACAAGACTGCGTTGATGGTTTCCCCGAGGGGAACGTGAAGACCGAAGTTCAGACTGGCTTCAAGGATTCAATGGAATTCATTAGCAACTCCCTTGCCATTCTTTCTCAGGTGGCATCGGCTATAACCACCACGGGGCAACAAAACCTTTCGGCACGTGGACGTTTGTTGCTATCTCAGAATCCTATCGCCAATAACTCACCACTTGATTCTCTAGACAAAACTGATGGCCTTCCTTCTTGGATCAACCACGAAGACCGAAGGGTGTTGAAGGCCATGGATAACAAACCTGAACCTAATGTCACTGTTGCAAAAGATGGCAGTGGAAAATTCAAAACCATCTCTGAAGCTTTAAATGCTATCCCTCAAAGCTTTACAGGACGGTATGTGATTTATGTCAAAGAAGGAGTGTACGATGAGCAAGTCACAGTAACTAAGAAAATGCAAAATATAACCATATATGGTGATGGATCCCAAAAGAGCATCATCACTGGCAACAAAAACTACAGGGACGGAGTCAGGACCTTCCTAACTGCAAGTTTTGTGGTAGAGGGAGACGCATTCTTAGGCATGGCAATGGGATTCAGAAACACTGCAGGCCCTGAAGGGCACCAAGCAGTGGCTGCAAGAGTGCAGGCAGATCGTGCAGTGTTTGCCAACTGTCGTTTTGAGGGCTACCAAGACACTCTATACACCCAAGCCCACAGACAGTTCTACAGGAGCTGCATCGTTACAGGCACAATTGACTTCATCTTTGGTGATGCAGCTGTGGTGTTCCAGAACTGCATCATGATAGTTAGGAAGCCAATGGACGGCCAGCAGAACATGGTGACTGCTCAAGGGAGAAAGGACAAGCAACAAGCCACAGGAATTGTGCTGCAAAAGTGCACCATCAAAGCTGATGACTCACTGGTTCCAGAGAAGGACAAGATCAGGAGCTACCTTGGGAGGCCATGGAAGGAGTACTCAAGAACCATTGTCATGGAATCAGAAATAGGTGACTTCATTAACCCTGATGGGTGGACAGCGTGGATGGGAGACTTTGCACTCAATACTTTGTACTATGCTGAGTATGCCAACACAGGACCTGGTGCCAGCACCAGTGCTAGGGTCAAGTGGCCTGGGTACAAGGTCATCAACAAGGATGAGGCAAGCAAGTTCACTGTGGGCACTTTCTTGAAGGGCACACTGGGAAATAAAGCTGATGGTGTTGCTCATTTTGATGAAATAGCCCCTAAACAATCAGAGGCAGACATGGCATCAAGGAAAACTTTCAACCTTGTTCTGCCCATTTTGTTGATGAATTGCTTTGTTCAGCTTGGTCAATGTGGTAGGCCACATAACGCAGAAGAAAGAGAGGATTTGGTCACAGCAACTTGCAAGCACACCCTTCATTTTCAAGTATGCATTTCTTCCTTGAGATCAGTCCCTGGCAGCAGCAAGACATCAGATCTAAAAGTGCTTGCTGAGATTGCATTGAATCTGACCACAACATATGCTGCAGATACTTTGTCCTATGTCTATCAGCTGCAATCTTCTTCTGCTTCAAATGGCTCCAATAACAATTACGTGTCCCGTTGCTTAAGTGACTGTGTGGAGGAATACTCAGAAGCCATAGAGAACTTGCATCACTCAAAACATGCACTTGCAAATGGAGATTGTGACAGAGTGGATACGTTGGTTTCTGCTGCTATGTCAGATGCTGAGACATGTGAAGATGGCTTCAAGGACATGCAAAGTGAAGACAGTGAATATTCCAACTCTCCTCTTACTGAACGTAATCGTTACTTCTCTCAACTCTGTAGTAATGCTCTTGCCATTTCAAAACTACTAGTTTGA 2439 0.4621 MAFQDFDLISERRRNEKRQKMRKRIMIGVVSSVVLVGMIGAVLFIVVKNDDTGNSNNKNSKESGKAQKNHTPTNTANNPHVTVSDKIVKLVCSTADYKDRCEEPLNKAIQNDPKLSQPKELLKLYVKLAEDEINKAFNKTVSMNFQSEEEKGAFEDCKKLFEDAKDDIATSISHLAQTEVKKVSEKIPDFNSWLSAVITFQQDCVDGFPEGNVKTEVQTGFKDSMEFISNSLAILSQVASAITTTGQQNLSARGRLLLSQNPIANNSPLDSLDKTDGLPSWINHEDRRVLKAMDNKPEPNVTVAKDGSGKFKTISEALNAIPQSFTGRYVIYVKEGVYDEQVTVTKKMQNITIYGDGSQKSIITGNKNYRDGVRTFLTASFVVEGDAFLGMAMGFRNTAGPEGHQAVAARVQADRAVFANCRFEGYQDTLYTQAHRQFYRSCIVTGTIDFIFGDAAVVFQNCIMIVRKPMDGQQNMVTAQGRKDKQQATGIVLQKCTIKADDSLVPEKDKIRSYLGRPWKEYSRTIVMESEIGDFINPDGWTAWMGDFALNTLYYAEYANTGPGASTSARVKWPGYKVINKDEASKFTVGTFLKGTLGNKADGVAHFDEIAPKQSEADMASRKTFNLVLPILLMNCFVQLGQCGRPHNAEEREDLVTATCKHTLHFQVCISSLRSVPGSSKTSDLKVLAEIALNLTTTYAADTLSYVYQLQSSSASNGSNNNYVSRCLSDCVEEYSEAIENLHHSKHALANGDCDRVDTLVSAAMSDAETCEDGFKDMQSEDSEYSNSPLTERNRYFSQLCSNALAISKLLV 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02589 812 Gene3D Invertase/pectin methylesterase inhibitor family protein 651 812 IPR035513 -
Cca11g02589 812 TIGRFAM PME_inhib: pectinesterase inhibitor domain 625 811 IPR006501 GO:0004857
Cca11g02589 812 TIGRFAM PME_inhib: pectinesterase inhibitor domain 77 238 IPR006501 GO:0004857
Cca11g02589 812 CDD PMEI-like_1 655 811 - -
Cca11g02589 812 PANTHER PECTINESTERASE 14 597 - -
Cca11g02589 812 Pfam Pectinesterase 300 595 IPR000070 GO:0030599|GO:0042545
Cca11g02589 812 Gene3D Invertase/pectin methylesterase inhibitor family protein 83 239 IPR035513 -
Cca11g02589 812 PANTHER PECTINESTERASE 14 597 - -
Cca11g02589 812 Gene3D - 294 609 IPR012334 -
Cca11g02589 812 ProSitePatterns Pectinesterase signature 2. 444 453 IPR033131 -
Cca11g02589 812 MobiDBLite consensus disorder prediction 53 80 - -
Cca11g02589 812 CDD PMEI-like_3 90 240 - -
Cca11g02589 812 Pfam Plant invertase/pectin methylesterase inhibitor 87 234 IPR006501 GO:0004857
Cca11g02589 812 Pfam Plant invertase/pectin methylesterase inhibitor 654 807 IPR006501 GO:0004857
Cca11g02589 812 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 654 811 IPR035513 -
Cca11g02589 812 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 86 237 IPR035513 -
Cca11g02589 812 SUPERFAMILY Pectin lyase-like 298 605 IPR011050 -
Cca11g02589 812 SMART PMEI_2 83 234 IPR006501 GO:0004857
Cca11g02589 812 SMART PMEI_2 651 807 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02589 Cca-Chr11 53154707 53158814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02589 1 595 Carbohydrate Esterase AT2G26450 47.411 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02589 - - gmx:100784679 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02589 11 53154707 53158814 Cca11g02589 11 53154707 53158814 ECH