Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02574 ATGGGGCACGTTGAAAGTGGAGCGAGATTTTTGGTTGCACTTACAGTCCTCGCTCTTCTTCTTGTTCTGTCGGCAGCCACCGACGGCTATAGATTGGTGACGGTCCGCAAGGACGGGCTGGGGGACTTCACGACGGTGACGGACGCCGTTAACAGCATCCCGTCGGGGAACAGTGAGCGCGTGGTGGTGTGGATCGGCTTCGGCGTGTACCGCGAGAAGATAAAGATAGATAGGTCGAAGCCAATGGTTACGTTTCAGGGCGAGATGGGTTTCTTCAACCAGATGCCCCTCATAACCTACAACGCCACCGCCTTACACTACGGCACAGTCGAAAGCGCCACCGTCGCTGTCGAATCCGACTACTTCATCGCTTCAAACATTGCCTTTGAGAACTCGGCTCCTATGCCAGATGAACACAGCGTTGGAGCACAAGCGGTGGCGATGACGATAGCGGGGGACAATGCTGTATTCAGTAACTGCAAGTTCCTTGGGTTTCAGGACACTTTGTGCGATGATAGAGGCAGTCATCTCTTCAAGAACTGCTACATAAGAGGCACCTACGACTTCATCTTTGGAAATGGAAAATCTGTCTACTTGAGAACTACCATTGAATCCGTGACAAAGGGTTTGAGTGTTATCACAGCGCAAGGTAGGGAAAGCCTCACAGATGACACTGGATTTACTTTCGTGGACTGCAATATAATTGGAGGTGGTAATGGAAACACTTACCTTGGACGTGCATGGAAGAAGAGCCCTAGGATCGTCTTTGCTAACACCTACATGGGCCCACTCATCAATAGTCGAGGATGGTTATTAGACGACCAACATCCTCAATCTGAATCCAACCAGACAATCTACTATGGAGAATATATGTGCTTCGGACCAGGAGCTGTTCCCTCTGGCCGCGTAAAATTTCGCAAGACAATGTCATATCAAGATGTACTTCCCTTCTTAAGCAATGCAGAATAA 969 0.4954 MGHVESGARFLVALTVLALLLVLSAATDGYRLVTVRKDGLGDFTTVTDAVNSIPSGNSERVVVWIGFGVYREKIKIDRSKPMVTFQGEMGFFNQMPLITYNATALHYGTVESATVAVESDYFIASNIAFENSAPMPDEHSVGAQAVAMTIAGDNAVFSNCKFLGFQDTLCDDRGSHLFKNCYIRGTYDFIFGNGKSVYLRTTIESVTKGLSVITAQGRESLTDDTGFTFVDCNIIGGGNGNTYLGRAWKKSPRIVFANTYMGPLINSRGWLLDDQHPQSESNQTIYYGEYMCFGPGAVPSGRVKFRKTMSYQDVLPFLSNAE 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02574 322 SUPERFAMILY Pectin lyase-like 32 318 IPR011050 -
Cca11g02574 322 PANTHER PECTINESTERASE 23 320 - -
Cca11g02574 322 Gene3D - 31 321 IPR012334 -
Cca11g02574 322 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 23 320 - -
Cca11g02574 322 Pfam Pectinesterase 33 308 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02574 Cca-Chr11 52934234 52935940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02574 23 319 Carbohydrate Esterase AT5G07410 46.128 4.64e-95 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02574 K01051 - gmx:100790786 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02574 11 52934234 52935940 Cca11g02574 11 52934234 52935940 ECH