Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02571 ATGGATGATGCTGGAGGGTCGAAATTGAATGGAATTAAGCAGATAGTGAGATTGAAGGAAATGTTTCAGAAGTGGCAAAGTGTGACTCTGGGATCAAAAGAGTCCAACAACAACCATTCTGATGTGACTCATGATCATGGTCATGGAGGCATATCACCAATGATTAACAAAAGGCTAACAAGTGTTGTGTATTGTGACTCTGATGAGGATAGTTGCTACAGCCCTCAACCACCACATGATGTTCCCAAAGGCTACTTAGCCGTCTATGTTGGGCCTGAGCTTCGGAGATTTATCATTCCCACAACCTACCTTAGCCACTCTTTGTTCAAGGTTTTGCTCGAAAAGGCTGCAGAAGAATTTGGATTTGATCATAGTGGTGGACTCACCATTCCATGTGAAATTGAGACCTTTAAATACCTCTTGAATTGCATGGAGAACCATCATGATAGCTCCACTGGAAACACAGGAACTATGGAAGAATAA 483 0.4224 MDDAGGSKLNGIKQIVRLKEMFQKWQSVTLGSKESNNNHSDVTHDHGHGGISPMINKRLTSVVYCDSDEDSCYSPQPPHDVPKGYLAVYVGPELRRFIIPTTYLSHSLFKVLLEKAAEEFGFDHSGGLTIPCEIETFKYLLNCMENHHDSSTGNTGTMEE 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02571 160 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 7 155 IPR003676 GO:0009733
Cca11g02571 160 Pfam Auxin responsive protein 63 143 IPR003676 GO:0009733
Cca11g02571 160 MobiDBLite consensus disorder prediction 31 50 - -
Cca11g02571 160 PANTHER SMALL AUXIN-UP RNA-RELATED 7 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02571 Cca-Chr11 52908015 52909674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02571 1 159 Calmodulin-binding Proteins AT3G43120 65.000 1.34e-72 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02571 K14488 - gmx:100795275 293.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02571 11 52908015 52909674 Cca11g02571 11 52908015 52909674 ECH
Cca11g02571 11 52908015 52909674 Cca08g01337 08 40287951 40297838 PCT