Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02565 ATGCAAACCAACACTCTCGCCATCACAGTACTCTCCGCTTATTTTCTCTTGTTGCTGTGTGCACCAAGCGCCGCCGCGGCCAGGGCGGCGCGAGACCCGCTCCGGTCATGGTGCGCGCAGGCCAGGTACCCCAGCCTCTGCGTGGAAACCCTCTCGAACTTCTCCAACAGCTCGGCGAAGCCCTTGGAGCTGGCACAAGCCGGCGTGAAGGTGACCCTGGGGCGCACGCGCAGCCTCTCCCTCTACCTCAGGACGCTCAAGTCACGCACCTTCGGGAAGAGGCAGCGAGTTGCGCTCAGCGACTGCGTCAACCAGGTCTCTGACTCGGTCACTCAGCTGAGCAGGACGTTGAACGAGTTGCAGCACCTCCACGCCCCGACCTTCCAGTGGCAGATGAGCAACGCCCAGACGTGGACCAGCGCCGCCCTCACCAACGGCGACGCTTGCCTCGACGGCTTCAGCTCCGCCCCCGAGAGCCTCAAGATGGAGTTCAAGCGTAGGCTCACCGACGTGGCCATGCTCACCAGTAACGCGCTGTATCTCATCACTCGCCTCGGTCATACCACCAATTCCCGAAACTGA 582 0.6271 MQTNTLAITVLSAYFLLLLCAPSAAAARAARDPLRSWCAQARYPSLCVETLSNFSNSSAKPLELAQAGVKVTLGRTRSLSLYLRTLKSRTFGKRQRVALSDCVNQVSDSVTQLSRTLNELQHLHAPTFQWQMSNAQTWTSAALTNGDACLDGFSSAPESLKMEFKRRLTDVAMLTSNALYLITRLGHTTNSRN 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02565 193 PANTHER PECTINESTERASE INHIBITOR-LIKE 8 191 - -
Cca11g02565 193 CDD PMEI-like_3 36 185 - -
Cca11g02565 193 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR 8 191 - -
Cca11g02565 193 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 185 IPR006501 GO:0004857
Cca11g02565 193 SMART PMEI_2 29 181 IPR006501 GO:0004857
Cca11g02565 193 Pfam Plant invertase/pectin methylesterase inhibitor 34 180 IPR006501 GO:0004857
Cca11g02565 193 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 186 IPR035513 -
Cca11g02565 193 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 185 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02565 Cca-Chr11 52862741 52863520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02565 34 188 Carbohydrate Esterase AT3G14310 28.659 7.09e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02565 - - gmx:100810705 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02565 11 52862741 52863520 Cca11g02565 11 52862741 52863520 ECH