Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02562 ATGAAGGCTCCATCCAATGGTTACTTGCCTAATTCTGGCGAAGGTGAAAGGAAGTCAATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCTTTGGTTTCTTTGCCTCCTGTCGGAAGTCTTGTGGTTTACTTCCCCCAAGGACACAGTGAGCAAGTTGCAGCTTCCATGCAAAAGGAGACTGACTTCATTCCCAGTTACCCTAATCTTCCTTCCCAGTTGATTTGCATGCTTCACAATGTTGCTTTGCATGCTGATCCAGAAACCGATGAGGTGTATGCGCAGATGACCCTTCAACCTGTAAACAAATATGAGAAAGAAGCAATACTGGCATCAGATATGGGCCTCAAACAAAGCCGTCAACCTACTGAGTTCTTTTGCAAAACTCTTACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTGCCTCGTAGAGCAGCTGAGAAAATATTCCCACCTTTGGATTATTCAATGCAACCTCCCGCACAGGAGCTTGTGGCCAAGGATTTGCACGACAATACATGGGCATTTAGACATATTTATAGGGGACAACCAAAGAGGCATTTATTGACTACTGGTTGGAGTGTATTTGTCAGCACAAAGAGACTGTTTGCCGGAGATGCAGTTCTTTTTATCAGAGATGAAAAGCAGCATCTTCTTTTAGGGATAAGGCGTGCTAATAGACAGCAACCAGCACTCTCTTCATCAGTGATATCTAGTGACAGCATGCATATTGGCATTCTtgctgctgcagctcatgctgctgcAAATAACAGCCCATTTACTATATTTTACAACCCAAGAGCTAGCCCCTCTGAATTTGTTGTTCCATTGGCCAAGTATAACAAAGCCATGTTCACTCAAGTCTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACTGAGGAGTCTGGAGTACGTAGATATATGGGTACAATCACTGGGATTAGTGACTTGGATCCTGTCCGATGGAAGAACTCACAGTGGCGCAATATTCAGGTTGGATGGGATGAATCAACAGCAGGTGAACGCCCCGGTAGAGTTTCAATTTGGGAAATTGAACCAGTAGTGACTCCTTTCTACATTTGCCCACCTCCATTTTTTAGGCCAAAGTTCCCCAGGCAACCAGGAATGCAAGATGACGAGTCAGATGTAGAAAATGCTTTCAAGAGAGCTATGCCTTGGCTTGGAGATGACTTTGGCATGAAGGATGCCTCGAGTTCAATTTTTCCCGGTTTGAGTTTAGTGCAGTGGATGAGCATGCAGCCGAATAATCAGCTTTCTGCTGCTCAATCAGGATGTTTCCAATCCATGCTTCCATCTAATACCCTTCAGGGTAACCTTACCACTGATGACCCATCCAAGTTATTGAGCTTTCAAGCTCCTGTCCTCTCTGCCCCAAATCTTCaattaaacaaaccaaatctaccaagtcaaatcaaacaattgcaacattccccagtgtcatggcctcagcagcagcaacagcaacaacagcagcagcagcaacaacaaaacctacagcaacaacaacagcagctacagtcattattgcaactgccaatgaaccagcttcagcagcagaggcaacagcagatgcctgaaccacaaaacctgccattgctgcagcaactgccccagcaagtaggacaacagccccagaaacagcaacagtcaagtcaacatgctacgatcatgaataatggggtagttgcttctaatcagtttgtacaacaaccaatggcatatggccaacttcaacaacaacaattactctcaggaggtatcccaccacagcaaggtatccagtcaggtagtaagaacacattcccattgacatccttaccacaagacacacaatttcagcaacagatagaccagcaagctagtctcttacagaggcagcagcaacaacagcagacacaattgcaacaatctccactgcagttgttgcaacaaaacctgccacagagagcgccacagcagccaccggccactcaaatgttacagcaaaacccctcagagcaacaactccacttacaattgctacagaaattgcagcagcagcagcagcagcaaaaacaacaacaacaacaaattctttCCACATCCACCCCACTTTTGCAGTCTCAGCTTCTACAACAAAACCAGCAATTACTGCAGCCCTTGCCACCTATATCTCAGCATCAGCCTCAGCAGCTTAGCAATAACGCATTTTCAACAGAGAAGCTTCTGAACAGCAACAACTTCTCTTCTTCAGGTCTTATGCAATCGCAACAGCTTCCTATGAACCAACCCCAAATTATGCAGAAATCACTTACCATTACTAGAGCTCCCTCTACACTAACAGATGGAGATGCCCCATCTTGTTCAACCTCTCCATCTACTAATAACTGCCAGGTGTCTCCTCCAAACCTCCTGAAAAGAAATCAGCAACTACCAGCGGCATTAGGAGGGAGTTTGATGGTTGAGCCCACTGGTAATCTGATACAGGAGCTTCAAAGTAAACCTGACATGCAGATCAAACATGAGTTGCTCAATGTAAAAGGACCTGACCAGTTGAAGTATAAAGGGTCAATTACTGGTCAGTTGGAAGCTTCTTCTTCTGGAACATCTTACTGTCTTGATCCTGGTAATGTCCAGCAGAACTTGCCACTTTCCAACTTCTGCATGGAAGGGGATGTCCAATCACACCCAAGAAACAGTTTACCATTTGACTCTAATCTGGATGGTCTAACACCTGATACTATGCTTCTAAGGGGGTATGACTCTCAAAAAGATCTTCAAAATTTGTTGTCTAACTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTGTCAACAGCTGACCTCAGCTCACAGTCATTTGGAGTGCCAAACATGCCTTTCAAGCCTGGTTGCTCAAGTGATGTTGGCATCAATGATACTGCAGTTCTGaataataataataataatGGCTTGCGGACTAACCAAACTCCACGCATGCGAACGTATACGAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATTGATGTTACCCGTTACAAGGGATATGATGAACTCCGGCATGATTTGGCTAGAATGTTTGGTATTGAAGGGCAGCTAGAAGATCCTCAACGGACTGACTGGAAATTAGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGATGAATTTGTAATCTGTGTCCAGAGCATAAAGATATTATCATCTGCAGAAGTGCAGCAAATGAGCTTGGATGGCGACTTAGGTGGTAATGTTCCAATCCCCAATCAAGCTTGCAGTGGGACAGACAGTGGCAATGCATGGAGGGGACAGTATGAAGATACCTCAGCTGCCTCCTTTAATAGGTAA 3378 0.3464 MKAPSNGYLPNSGEGERKSINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETDFIPSYPNLPSQLICMLHNVALHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQSRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDAVLFIRDEKQHLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMFTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNIQVGWDESTAGERPGRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMQDDESDVENAFKRAMPWLGDDFGMKDASSSIFPGLSLVQWMSMQPNNQLSAAQSGCFQSMLPSNTLQGNLTTDDPSKLLSFQAPVLSAPNLQLNKPNLPSQIKQLQHSPVSWPQQQQQQQQQQQQQQNLQQQQQQLQSLLQLPMNQLQQQRQQQMPEPQNLPLLQQLPQQVGQQPQKQQQSSQHATIMNNGVVASNQFVQQPMAYGQLQQQQLLSGGIPPQQGIQSGSKNTFPLTSLPQDTQFQQQIDQQASLLQRQQQQQQTQLQQSPLQLLQQNLPQRAPQQPPATQMLQQNPSEQQLHLQLLQKLQQQQQQQKQQQQQILSTSTPLLQSQLLQQNQQLLQPLPPISQHQPQQLSNNAFSTEKLLNSNNFSSSGLMQSQQLPMNQPQIMQKSLTITRAPSTLTDGDAPSCSTSPSTNNCQVSPPNLLKRNQQLPAALGGSLMVEPTGNLIQELQSKPDMQIKHELLNVKGPDQLKYKGSITGQLEASSSGTSYCLDPGNVQQNLPLSNFCMEGDVQSHPRNSLPFDSNLDGLTPDTMLLRGYDSQKDLQNLLSNYGGAPRDIETELSTADLSSQSFGVPNMPFKPGCSSDVGINDTAVLNNNNNNGLRTNQTPRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWDEFVICVQSIKILSSAEVQQMSLDGDLGGNVPIPNQACSGTDSGNAWRGQYEDTSAASFNR 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02562 1125 CDD B3_DNA 125 226 IPR003340 GO:0003677
Cca11g02562 1125 SMART B3_2 126 228 IPR003340 GO:0003677
Cca11g02562 1125 Gene3D - 993 1086 - -
Cca11g02562 1125 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1113 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca11g02562 1125 Coils Coil 493 521 - -
Cca11g02562 1125 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca11g02562 1125 MobiDBLite consensus disorder prediction 595 615 - -
Cca11g02562 1125 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Cca11g02562 1125 Gene3D - 289 360 - -
Cca11g02562 1125 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Cca11g02562 1125 Pfam AUX/IAA family 986 1083 IPR033389 -
Cca11g02562 1125 Gene3D - 123 227 IPR015300 -
Cca11g02562 1125 PANTHER AUXIN RESPONSE FACTOR 19 1 1113 - -
Cca11g02562 1125 MobiDBLite consensus disorder prediction 1102 1125 - -
Cca11g02562 1125 ProSiteProfiles PB1 domain profile. 997 1090 IPR000270 GO:0005515
Cca11g02562 1125 Coils Coil 680 704 - -
Cca11g02562 1125 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Cca11g02562 1125 SUPERFAMILY CAD & PB1 domains 1010 1075 - -
Cca11g02562 1125 MobiDBLite consensus disorder prediction 784 804 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02562 Cca-Chr11 52772117 52780360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02562 1 483 B3 DNA Binding Superfamily AT1G19220 82.816 0.0 831
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca11g02562 AUX_IAA 9.9e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02562 - K14486 gmx:100805456 936.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02562 11 52772117 52780360 Cca11g02562 11 52772117 52780360 ECH