Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02560 ATGATGAACGAAAAGGCAGAGGAGCATAGGGACATTTCAAAGTACAAAGGGGTCCGAAAGAGAAAATGGGGAAAGTGGGTATCCGAAATAAGGCTACCCAACAGCCGCAAGAGAATCTGGTTGGGATCCTACGACTCCGCCGAGAAGGCCGCACGTGCTTTCGACGCGGCCATGTTCTGCTTACGTGGCCGCAACGCCAACTTTAATTTCCCCGACACCCCGCCCGACATCGCCGGCGGAAGCTCCATGACGCCCTCCCAAATTCAGGCCGCCGCCGCCCAGTTCGCCAACGCCGCCTCCCACGAGGGCCTGGCGCCTCCCTCCTCTTCCATCTCACTTCAAACGGACAGTGACGTCACCACACATAGCGCTCCGCTAACGGATTTGTTCACGCCCGTTGCCTCCGCCAATTACGAATCCGATTACGGGATTTTCCCCGCTTTTGACGAGTTCAGTGGGGAGTTTTACGTGCCGGAAGCGgcgaatgtgaattacggagaagagaatgcgaatgggaatgcaaattcaaatACAGAGGGGTTGATAGTGGATGAATCTTTCTTGTGGAATTTTTGA 576 0.5087 MMNEKAEEHRDISKYKGVRKRKWGKWVSEIRLPNSRKRIWLGSYDSAEKAARAFDAAMFCLRGRNANFNFPDTPPDIAGGSSMTPSQIQAAAAQFANAASHEGLAPPSSSISLQTDSDVTTHSAPLTDLFTPVASANYESDYGIFPAFDEFSGEFYVPEAANVNYGEENANGNANSNTEGLIVDESFLWNF 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02560 191 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
Cca11g02560 191 Gene3D AP2/ERF domain 13 72 IPR036955 GO:0003700|GO:0006355
Cca11g02560 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF017 6 191 - -
Cca11g02560 191 SUPERFAMILY DNA-binding domain 13 72 IPR016177 GO:0003677
Cca11g02560 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 191 - -
Cca11g02560 191 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Cca11g02560 191 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Cca11g02560 191 Pfam AP2 domain 13 63 IPR001471 GO:0003700|GO:0006355
Cca11g02560 191 CDD AP2 13 73 IPR001471 GO:0003700|GO:0006355
Cca11g02560 191 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02560 Cca-Chr11 52757406 52758342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02560 13 191 AP2-EREBP Transcription Factor Family AT1G19210 48.936 4.91e-56 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca11g02560 AP2 7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02560 - - ccaj:109809176 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02560 11 52757406 52758342 Cca11g02560 11 52757406 52758342 ECH