Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02557 ATGCAGCCACAGAGGTTAAGGCAGCATGCCATGATGCAGCCCTCTCTCTACCACCACCCTGCTCTCCTTACTCCTCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCAAGTACATGCCGCAGTGTTTATGTCGGCAACATTCATCCCCAGGTTACAGACGCCCTTCTTCATGAACTTTTTTCAACTGCAGGTGCCCTTGAAGGATGCAAACTTATTAGGAAAGAGAAGTCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCAGCTGCATTTGCTATTGTAACTCTGAATGGGAGGAATATTTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACCTCAGGTCACTTTAATATTTTTGTTGGTGACCTTAGTCCCGAGGTTACAGATGCAACATTGTATGCTTGTTTTTCTGTATATCCTAGTTGTTCTGATGCAAGGGTGATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTCCGGAATCAGCAGGAAGCCCAAAGTGCTATAAATGATTTGACTGGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCCACCAAAGGGGCCAATGCCAGTGATGAAAAGCAGGGCTCAGATTCAAAAAGTGTTGTGGAGTTAACAAATGGAACATCTGAAGAAGGCCAGGAAATAACCAATGATGATGCCCCCGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTGGCTCCAGAGGTTACATCTGTTGATCTCCATCACCATTTTCATTCTCTTGGTGCTGGAACTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATACAGTACCCATGCTGAAGCAGCTCTTGCTATACAAATGGGTAATGCTCGAATTCTCTGTGGCAAACCTATCAAGTGTTCATGGGGTAGCAAACCCACTCCTCCGGGTACAGCCTCTACTCCTCTTCCCCCACCTGCTTCTGCGAGTGTGCCGGGCTTTTCTCTTGCTGGTCTTGCAGCGTATGAACGACAGATGGCATTGAGTAAAATGGGAGGTGCACATGCCGCCCTTATGCATCAGCAAGGTCAACATGCCCTAAAGCAGGCAGCCATGGGAATGGGTGCTCCTGGGGCTGGTTATGATGCAAGATTCCAGAATGTTGCGACCACCCAGCACCTAATGTACTATCAGTAA 1239 0.4673 MQPQRLRQHAMMQPSLYHHPALLTPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTDALLHELFSTAGALEGCKLIRKEKSSYGFVDYFDRSSAAFAIVTLNGRNIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWATKGANASDEKQGSDSKSVVELTNGTSEEGQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHHHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILCGKPIKCSWGSKPTPPGTASTPLPPPASASVPGFSLAGLAAYERQMALSKMGGAHAALMHQQGQHALKQAAMGMGAPGAGYDARFQNVATTQHLMYYQ 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02557 412 SMART rrm1_1 132 205 IPR000504 GO:0003723
Cca11g02557 412 SMART rrm1_1 253 322 IPR000504 GO:0003723
Cca11g02557 412 SMART rrm1_1 47 116 IPR000504 GO:0003723
Cca11g02557 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 320 IPR000504 GO:0003723
Cca11g02557 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Cca11g02557 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Cca11g02557 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 326 IPR000504 GO:0003723
Cca11g02557 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Cca11g02557 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Cca11g02557 412 MobiDBLite consensus disorder prediction 210 248 - -
Cca11g02557 412 SUPERFAMILY RNA-binding domain, RBD 124 219 IPR035979 GO:0003676
Cca11g02557 412 CDD RRM1_TIA1_like 48 118 - -
Cca11g02557 412 Gene3D - 126 226 IPR012677 -
Cca11g02557 412 PANTHER NUCLEOLYSIN TIAR-LIKE PROTEIN 2 408 - -
Cca11g02557 412 SUPERFAMILY RNA-binding domain, RBD 35 124 IPR035979 GO:0003676
Cca11g02557 412 SUPERFAMILY RNA-binding domain, RBD 243 331 IPR035979 GO:0003676
Cca11g02557 412 Gene3D - 229 330 IPR012677 -
Cca11g02557 412 Gene3D - 40 125 IPR012677 -
Cca11g02557 412 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 2 408 - -
Cca11g02557 412 CDD RRM3_TIA1_like 252 326 - -
Cca11g02557 412 CDD RRM2_PUB1 132 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02557 Cca-Chr11 52721173 52725645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02557 47 326 Eukaryotic Initiation Factors Gene Family AT2G23350 30.584 1.13e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02557 K13201 - gmx:100813736 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02557 11 52721173 52725645 Cca11g02557 11 52721173 52725645 ECH