Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02556 ATGTCAAGCTCATCGGAGTATTCAGGTTTTTCCGGCCACCGCCCGGCGGAAAAGTCAACTTTCTCTCAGACTTGTAGTCTATTGAGCCAATACCTCAAGGAAAAGGGCAGCTTCGGAGACCTTAGTCTCGGAATGAGTTGCGCCGTCGAACCAAATGGTTCCCCTGAAACATCGTGTCACTCTGCAACAACCATGGAGTTGTTTCCCACCATCATGACGCAAAGGAACCCCACTGCCATGGATTTCCTCTCTCCGCAAACTGCTTTTCCTCGCCACTCTGAGGTTCCATCCATTGTTAAACCAAGTTCATTCAAGTCTATGGAGAAGGAGCCTAAAGCTTCTCAGTTGACAATCTTTTATGCTGGGCAAGTTGTTGAGATAATGTCATTGGCCAGCAAGGGAACACCCCAAAAAGGCCAGAACTCATCTGCATATGTTCACACTCATAACCAGCAAGGGAGTCATCCTTCGTTTGTTCCTAATATCACCCCTCAAACACCATCCAGACCAATTGCTTGTGATCTTCCAATTGCTAGGAAAGCTTCACTTCATCGGTTCCTTGAGAAGAGAAAAGATAGAATTGCTGCCAAAGCGCCATATCAAACAAACAGTCCCAACTCTGCTTCTAATAAGGCGGGTGAATCCATGTCTTGGCTTGGATTAGGTGCTAAATCAACATAA 681 0.4626 MSSSSEYSGFSGHRPAEKSTFSQTCSLLSQYLKEKGSFGDLSLGMSCAVEPNGSPETSCHSATTMELFPTIMTQRNPTAMDFLSPQTAFPRHSEVPSIVKPSSFKSMEKEPKASQLTIFYAGQVVEIMSLASKGTPQKGQNSSAYVHTHNQQGSHPSFVPNITPQTPSRPIACDLPIARKASLHRFLEKRKDRIAAKAPYQTNSPNSASNKAGESMSWLGLGAKST 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02556 226 MobiDBLite consensus disorder prediction 199 214 - -
Cca11g02556 226 Pfam Jas motif 176 201 IPR018467 -
Cca11g02556 226 PANTHER PROTEIN TIFY 10A 16 222 - -
Cca11g02556 226 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 16 222 IPR040390 -
Cca11g02556 226 MobiDBLite consensus disorder prediction 193 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02556 Cca-Chr11 52707725 52710012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02556 1 224 Tify Gene Family AT1G19180 43.478 3.97e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Cca11g02556 Jas_motif 1.9e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02556 K13464 - gmx:100802800 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02556 11 52707725 52710012 Cca11g02556 11 52707725 52710012 ECH