Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02554 ATGGCCGCTGTTCGCCCATtcctcctcctcctcctcctcctcctcctccCACTCTCCCTATCCCTCCCTGAAAACGAAGCCCTCCTCGCCCTCAAAAACTCCTTCTCCGACCCCCAACGCCTCTCGTCTTGGCTCCCCAACCAGAACCCCTGCACCGCCAAGTGGGTCGGCATCATTTGCTTCAACAACATCATCACCAGCATCCACCTTGTTGACATGGGCCTCTCTGGCCCAATCAACGTGGACCCCCTCCTCAACATCCCCTCCCTCCGCTCCGTTAGCTTCATCAGCAATAACTTCTCCGGCCCAATCCCTCCCTTCAACAAACTTGGTGCCCTCAAGGCCCTTTACATAGCTCGAAACCAATTCTCCGGCCCAATCCCCCCTGACTTTTTCTCCAGCTTAGCCTCCCTAAAAAAAGTATGGATCTCTGACAACAAATTCTCCGGCACCATCCCCAACTCCCTAACCACCCTCCGCTTCCTCACCGAACTCCACCTCGAAAACAACCAATTCTCCGGCCCCATCCCCGAATTCAAACAAGACATCAAATCCATAGACATGTCCAACAACATTCTCCAAGGCCAAATCCCCGCCACCATGCAACACTTCGACGTCAAATCATTCTCCAACAATAAAGCCCTTTGCGGAAAGCCTCTCCCCAAAGAGTGTGAAGCACCAAGCAACAACTCACAAGGCTCTGGCTGGGGGATGAAGGTTGTTATACTTGTTGTTCTAGCTGTCCTCGTGGCGGTCATTTTCCTCTTGGTGAAGTCCAAGCGTCGTCGTGACGATGACTTTAGCGTCATGAGTAGGGAGCAGCCAGAGGAGGTGGTGCAGGTGCACGTGCCTAGCTCTAACCACTCTAGGGGTGGCTCTGAGGGGGGCAGTAGGAAGGAGTCATCCAAGAAAGGCTCATCTCGTGGCGGCATGGGGGACCTTGTGATGGTCAACGATGAGAAGGGCGTGTTTGGTTTGCCCGATTTGATGAAGGCTGCGGCAGAGGTTCTAGGCAACGGTGGGTTGGGCTCAGCGTACAAGGCTGCCATGGCGAATGGCTTGTCGGTGGTGGTCAAGCGAATGCGAGAGATGAATAAAGTCAGTAGAGACATATTCGACGCCGAGATGAGACGCTTTGGAAGACTTAGAAATCCTAACATTTTGACTCCTTTGGCTTACCATTACCGTAGGGAGGAAAAGTTGTTCGTCACCGAGTACATGCCCAAAGGAAGCTTGTTATATGTGTTGCATGGTGATAGAGGATCCAGTCATGCTGAGCTGAACTGGCCAATCCGTTTGAATATTGTGAAAGGAATTGCACGAGGGTTGGGATTTATCTACACAGAATTCTCGAGCGAAGAGCTACCACATGGAAACTTGAAATCTAGCAATGTATTACTAGGTGAAAACTACGAGGCTTTCCTAGGGGACTTCGCCTTTCACCCATTAATAAACCCCAACTACGCTGTACAAACAATGTTCGCCTACAAAACACCTGATTATGTGACGTATCAACGTGTTTCACAGAAGACCGATGTTTACTGCCTTGGGATCATCATCCTCGAAATCATCACCGGGAAGTTCCCTTCTCAATATCACAGCAACGGTAAGGGTGGGACCGACGTGGTGCAGTGGGTGTTCTCTGCGATTTCTGAGAGAAGAGAGGCAGAATGCATTGATCCAGAGTTGAAAACCAATCACTCCAACTCCATCAATCAAATGCTGCAACTTCTCCAAGTGGGGGCTGCTTGCACAGAGAGCAACCCCGACCAACGACTTAACATGAAGGAAGCCATTAGAAGGATAGAAGAGGTTCAAGTTTAA 1824 0.4973 MAAVRPFLLLLLLLLLPLSLSLPENEALLALKNSFSDPQRLSSWLPNQNPCTAKWVGIICFNNIITSIHLVDMGLSGPINVDPLLNIPSLRSVSFISNNFSGPIPPFNKLGALKALYIARNQFSGPIPPDFFSSLASLKKVWISDNKFSGTIPNSLTTLRFLTELHLENNQFSGPIPEFKQDIKSIDMSNNILQGQIPATMQHFDVKSFSNNKALCGKPLPKECEAPSNNSQGSGWGMKVVILVVLAVLVAVIFLLVKSKRRRDDDFSVMSREQPEEVVQVHVPSSNHSRGGSEGGSRKESSKKGSSRGGMGDLVMVNDEKGVFGLPDLMKAAAEVLGNGGLGSAYKAAMANGLSVVVKRMREMNKVSRDIFDAEMRRFGRLRNPNILTPLAYHYRREEKLFVTEYMPKGSLLYVLHGDRGSSHAELNWPIRLNIVKGIARGLGFIYTEFSSEELPHGNLKSSNVLLGENYEAFLGDFAFHPLINPNYAVQTMFAYKTPDYVTYQRVSQKTDVYCLGIIILEIITGKFPSQYHSNGKGGTDVVQWVFSAISERREAECIDPELKTNHSNSINQMLQLLQVGAACTESNPDQRLNMKEAIRRIEEVQV 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02554 607 MobiDBLite consensus disorder prediction 265 313 - -
Cca11g02554 607 SUPERFAMILY L domain-like 23 219 - -
Cca11g02554 607 Pfam Leucine rich repeat N-terminal domain 24 60 IPR013210 -
Cca11g02554 607 ProSiteProfiles Protein kinase domain profile. 331 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02554 607 SUPERFAMILY Protein kinase-like (PK-like) 335 602 IPR011009 -
Cca11g02554 607 CDD STKc_IRAK 337 604 - -
Cca11g02554 607 Pfam Leucine rich repeat 113 172 IPR001611 GO:0005515
Cca11g02554 607 Gene3D Ribonuclease Inhibitor 23 131 IPR032675 -
Cca11g02554 607 Gene3D Transferase(Phosphotransferase) domain 1 408 607 - -
Cca11g02554 607 PANTHER LRR RECEPTOR-LIKE KINASE 8 607 - -
Cca11g02554 607 Gene3D Ribonuclease Inhibitor 132 225 IPR032675 -
Cca11g02554 607 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 8 607 - -
Cca11g02554 607 Gene3D Phosphorylase Kinase; domain 1 337 407 - -
Cca11g02554 607 Pfam Protein kinase domain 335 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02554 Cca-Chr11 52684313 52686872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02554 1 607 Receptor kinase-like Gene Family AT3G42880 50.469 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca11g02554 Pkinase 7.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02554 - - gmx:100816925 954.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02554 11 52684313 52686872 Cca11g02554 11 52684313 52686872 ECH