Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02548 ATGGCAATTTCGGGGTCAGAGACTCAGAGTTCCTCAGTGAAAAGCGTGGCACAGGTTGAAGTTGAGTGTGTGAAATGCGACTCGTGTGGTTTCACAGAAGAGTGCACCCCTGCATACATCTCAAGGGTGCGTCAGAGGTACCAGGGTCGATGGCTATGCGGTCTTTGTGTGGAGGCTGTGCAACACGAGGTGGTGAGATCAGATAGTGTCATCTCCACGGAAGAAGCTCTGGACCGCCACATCAGTTTCTGCAGAGAGTTCAGATCATCAACGGTTCTAAATAAAACAGAGCACCCCATCTTCGTCATGGGGCGCGTTCTCCGGAGGAGCTTGGATTCTCCCCGGCCTCTCCGGTCCAACTCCAGTGGGGCGCTTCCCTCCGTCGATGGAGTTCGCGCCCCACACTTGATTCGATCGGAGAGTTGCTTCTCCACCATCTCCGGTTAA 447 0.5436 MAISGSETQSSSVKSVAQVEVECVKCDSCGFTEECTPAYISRVRQRYQGRWLCGLCVEAVQHEVVRSDSVISTEEALDRHISFCREFRSSTVLNKTEHPIFVMGRVLRRSLDSPRPLRSNSSGALPSVDGVRAPHLIRSESCFSTISG 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02548 148 Pfam Protein of unknown function (DUF1677) 21 109 IPR012876 -
Cca11g02548 148 PANTHER OS01G0745000 PROTEIN 1 147 IPR012876 -
Cca11g02548 148 PANTHER DUF1677 FAMILY PROTEIN 1 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02548 Cca-Chr11 52631772 52632595 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02548 - - gmx:100797385 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02548 11 52631772 52632595 Cca03g01667 03 35790001 35790420 ECH
Cca11g02548 11 52631772 52632595 Cca05g00456 05 9998276 9999204 ECH
Cca11g02548 11 52631772 52632595 Cca11g02548 11 52631772 52632595 ECH