LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca11g02544	ATGGACTCAATTGCTTTCTCCTTGATTTTTTTCATTCTTCAAGTCACAATGCTATCCGCCAAGAAGACTTACATAGTACACATGAAACACGGCCACGATGCCTCCGTCTACCCCACGCACCGTGAGTGGTATAATGCAGCACTCGATGcttcttcttcttcttcttcATACGATTCCATGCTATACGCCTACACCGCTGCTTACAACGGCTTCGCTGCCACCCTCGACCCTCAACAAGCCCAGGCGCTGCGAGCCTCCGATTCTGTCTTGGGCGTCTACGAAGACACGCGCTACACGCTCCACACCACTCGCACCCCCCAGTTCCTGGGCCTCCAGGCCCATTCTTCTTTATGGGAAGACCTCCACCAACCCTCGCACGACGTCGTCATTGGCGTCCTCGACACAGGCGTCTGGCCCGAATCTCTCAGCTTCCACGACTCCCAAATGCCTCAAATCCCCACGCGCTGGCGCGGCAACTGTGAATCCGCACCCGACTTCGACCCTTCCCTCTGCAATAACAAACTCATCGCTGCTCGCACCTTCTCCAAGGGCTACCGCATGGCCTCCGCTAATGCTAGAAAACCTAGGGACCTTGCCTCGCCGCGTGACAACGACGGCCACGGCACGCACACTGCATCCACCGCAGCCGGCTCCTCCGTCGCCAACGCCACTCTCCTCGGCTACGCCACTGGCACTGCGCGCGGGATGGCGCCGCACGCGCGTCTCGCTGCCTACAAAGTCTGCTGGACCGACGGCTGTTTCGCCTCCGACATTCTCGCCGGGATGGATCAGGCAATCCAGGACGGCGTCGACGTcctctccctctccctcggcggctcctcctccgtcCCGTACTACTTCGACACCATCGCCATCGGCGCCTTCGCGGCGGTGGAGAGAGGAATCTTCGTTGCGTGCTCGGCCGGGAATACCGGACCTCGCTCCGGTTCTGTCGCGAATGTCGCTCCGTGGATCATGACCGTCGGCGCCGGAACCCTGGACCGCGATTTTCCGGCGTACGCTACTCTAGGCAACGGGAAACGCTTCGCCGGAGTTTCGCTTTACAGCGGAGAGGGAATGGGAGACGAACCGGTCGGTTTGGTTTATTTCGACGACCGGTCGAACTCGTCGAGCAGCATTTGCATGCCAGGCTCGCTGGACTCCGAGAGCGTGCGCGGGAAGGTGGTGGTGTGCGACCGGGGGCTGAACGCGCGCGTGGAGAAGGGAGCGGTGGTGCGCGATGCCGGAGGCGTCGGGATGATTCTGGCGAACACGGCGGCGAGCGGCGAGGGACTGGTGGCGGACAGTCACGTGGTGGCGGCTGTCGCGGTGGGGGAAAGCGCGGGCGATGAGATCAGACAGTACGCGTCGTTGGATCCTAATCCAACCGCGGTTCTTAGCTTCGCGGGGACCGTGTTGAACGTGAGGCCCTCGCCGGTTGTGGCATCGTTCAGCTCTCGCGGGCCCAATTGCGTGACGGCCCAGATACTAAAACCGGACGTGATTGGGCCTGGAGTGAACATCTTAGCGGGATGGTCCGGAGCGGTTGGCCCATCTGGGTCCCAAGACACACGCAAAACGCGATTCAACATAATGTCTGGTACGTCCATGTCGTGTCCCCACATAAGTGGGTTGGCTGCGCTGTTGAAAGCAGCCCATCCTGATTGGAGTCCAAGTGCGATCAAATCTGCACTCATGACAACGGCCTATACCCATGACAACACCGAGTCTCCACTTCGTGACACAACGGGTGAAGAAGCCTTCTCCACACCGTGGGCCTATGGGGCCGGTCATGTGAACCCTCAAAAGGCCCTCTCTCCTGGGCTTGTTTATGATGCCTCCACCCAGGACTACATTGCGTTTTTGTGCTCCTTGAACTACACCCTTGACCATCTCAGACTCGTTGTCAAGCGTCTTGATGCCAATTGTTCCCTCAAATTTACTGACCCGGGTGACCTCAATTATCCATCTTTCTCCGTTGTTTTCGGAAGCAATAAGGTTGTTCGTTACACGCGCACCTTGACCAACGTGGGGGACCCAGGTTCTGTCTATGACGTGGCTGTGAGCGCGCCCTCCATGGTGGGGATAACGGTGAATCCTAATAGGCTTGCGTTTGGTGAAGTAGGGGAAAGGCAAACGTACACGGTGACGTTCGTGTCCAATAGGAGTCTTAACGATTCCGTTACGTCTGATTTTGGTAGCATCATGTGGAGCAATGAACAGCACCAAGTTAGAAGCCCGGTTGCTTTTACATGGACATATTTTTGA	2268	0.5657	MDSIAFSLIFFILQVTMLSAKKTYIVHMKHGHDASVYPTHREWYNAALDASSSSSSYDSMLYAYTAAYNGFAATLDPQQAQALRASDSVLGVYEDTRYTLHTTRTPQFLGLQAHSSLWEDLHQPSHDVVIGVLDTGVWPESLSFHDSQMPQIPTRWRGNCESAPDFDPSLCNNKLIAARTFSKGYRMASANARKPRDLASPRDNDGHGTHTASTAAGSSVANATLLGYATGTARGMAPHARLAAYKVCWTDGCFASDILAGMDQAIQDGVDVLSLSLGGSSSVPYYFDTIAIGAFAAVERGIFVACSAGNTGPRSGSVANVAPWIMTVGAGTLDRDFPAYATLGNGKRFAGVSLYSGEGMGDEPVGLVYFDDRSNSSSSICMPGSLDSESVRGKVVVCDRGLNARVEKGAVVRDAGGVGMILANTAASGEGLVADSHVVAAVAVGESAGDEIRQYASLDPNPTAVLSFAGTVLNVRPSPVVASFSSRGPNCVTAQILKPDVIGPGVNILAGWSGAVGPSGSQDTRKTRFNIMSGTSMSCPHISGLAALLKAAHPDWSPSAIKSALMTTAYTHDNTESPLRDTTGEEAFSTPWAYGAGHVNPQKALSPGLVYDASTQDYIAFLCSLNYTLDHLRLVVKRLDANCSLKFTDPGDLNYPSFSVVFGSNKVVRYTRTLTNVGDPGSVYDVAVSAPSMVGITVNPNRLAFGEVGERQTYTVTFVSNRSLNDSVTSDFGSIMWSNEQHQVRSPVAFTWTYF	755

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cca11g02544	755	Pfam	Peptidase inhibitor I9	23	101	IPR010259	-
Cca11g02544	755	PRINTS	Subtilisin serine protease family (S8) signature	125	144	IPR015500	-
Cca11g02544	755	PRINTS	Subtilisin serine protease family (S8) signature	203	216	IPR015500	-
Cca11g02544	755	PRINTS	Subtilisin serine protease family (S8) signature	533	549	IPR015500	-
Cca11g02544	755	MobiDBLite	consensus disorder prediction	187	214	-	-
Cca11g02544	755	PANTHER	CUCUMISIN-RELATED	14	752	-	-
Cca11g02544	755	SUPERFAMILY	Subtilisin-like	100	609	IPR036852	GO:0004252\|GO:0006508
Cca11g02544	755	Gene3D	Peptidase S8/S53 domain	127	618	IPR036852	GO:0004252\|GO:0006508
Cca11g02544	755	ProSitePatterns	Serine proteases, subtilase family, serine active site.	534	544	IPR023828	-
Cca11g02544	755	Pfam	Subtilase family	126	574	IPR000209	GO:0006508\|GO:0008236

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca11g02544	Cca-Chr11	52597529	52599796	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca11g02544	8	755	Subtilisin-like Serine Gene Family	AT2G05920	64.229	0.0	980

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca11g02544	-		-	gmx:100786523	1321.99

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca11g02544	11	52597529	52599796	Cca11g02544	11	52597529	52599796	ECH
	Cca11g02544	11	52597529	52599796	Cca08g01372	08	41281360	41283782	PCT

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