Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02542 ATGAAAATCGCATGGGGATCGATCTTCTCGAGTTGTTTCAAGGGTGATGAGTCTGTGTCACCTTCTCCCAAGCCCACCAAAGTGGTGGCTACAAAAGGTGGTTCTTCTTCCAACAGGGTATCCATAACGGACTTGAGTTTTCCTGGCTCAACGCTTTCGGAGGATCTGTCCGTTTCTCTAGTGGGATCTAACCTCCATGTTTTTTCACTCGCGGAGCTCAAGATTATAACGCAGAGTTTCTCTTCAAGCAACTTTCTCGGTGAAGGGGGGTTCGGGCCCGTGCACAAGGGCTTCATTGATGACAAGCTTAGGCCTGGTCTTGAGCCGCAACCCGTGGCCGTCAAGCTCTTGGACTTGGACGGTTCTCAGGGCCATAAAGAGTGGTTGACTGAAGTTGTGTTTTTGGGTCAACTAAGGCATCCACACCTTGTGAAGTTGATTGGATATTGCTGTGAAGAAGAGCACAGGCTTTTGGTGTATGAATATTTACCACGAGGCAGCTTAGAGAATCAACTTTTTAGAAGATTTACGGCATCGTTACCATGGTCAACAAGAATGAAAATTGCTGCTGGAGCTGCAAAGGGACTGGCTTTTCTACATGAAGCAAAGAAACCAGTCATCTATAGAGATTTCAAAGCTTCAAACATCTTGTTAGACTCTGATTATAATGCAAAGCTTTCTGATTTTGGCTTGGCTAAAGATGGTCCCGAGGGAGATGACACCCACGTTTCAACTAGAGTGATGGGCACTCAAGGATATGCAGCCCCAGAATACATTATGACAGGACACTTGACAGCAATGAGTGATGTGTATAGTTTTGGAGTTGTCCTTTTGGAGCTTCTAACAGGAAGAAGGTCAGTGGACAAAGGGAGGCCAGCAAGAGAGCAGAACCTGGTGGAATGGGCCCGGCCCGTTTTGAATGATTCTCGAAAGCTCAGCAGAATAATGGATCCAAGACTTGAGGGCCAGTACTCTGAGATAGGGGCAAAAAAAGCTGCTGCATTGGCTTATCAATGCCTCAGCCACAGGCCAAGGAGTAGACCCTTGATGACCACAGTGGTTAATGTTCTCGACCCACTTCAGGACTTTCATGATGTCCCAATTGGACCCTTTGTTTACACAGTTCCAGCTGATCAAGAGAGTGAAACACCTAAAGAGAGGAAGAGAAATCATCATCACAACAATGGCCATAAGCATGATGAGGTCAATAAAGATAATAATGCAAATGAATGTGAAGCACCTAGGGAGAGGAGGAGGGAAAATGGTCACCATCACAAAAGTCATCATCGCCACAATAATGGTCATAGGCATCATCCACTTAAATCGCCAAAGTCACCAATTTCACAATCAGAGAATGATCCACACCAAAATGGTAGAAGAAGTGGATCAAACTCATCACCTGATACATCCATTGCATCAGAAGGAGCAGGGAGCATGGGTTAG 1443 0.4574 MKIAWGSIFSSCFKGDESVSPSPKPTKVVATKGGSSSNRVSITDLSFPGSTLSEDLSVSLVGSNLHVFSLAELKIITQSFSSSNFLGEGGFGPVHKGFIDDKLRPGLEPQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHPHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRRFTASLPWSTRMKIAAGAAKGLAFLHEAKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVDKGRPAREQNLVEWARPVLNDSRKLSRIMDPRLEGQYSEIGAKKAAALAYQCLSHRPRSRPLMTTVVNVLDPLQDFHDVPIGPFVYTVPADQESETPKERKRNHHHNNGHKHDEVNKDNNANECEAPRERRRENGHHHKSHHRHNNGHRHHPLKSPKSPISQSENDPHQNGRRSGSNSSPDTSIASEGAGSMG 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02542 480 MobiDBLite consensus disorder prediction 379 480 - -
Cca11g02542 480 Gene3D Phosphorylase Kinase; domain 1 49 162 - -
Cca11g02542 480 Pfam Protein tyrosine and serine/threonine kinase 84 356 IPR001245 GO:0004672|GO:0006468
Cca11g02542 480 CDD STKc_IRAK 86 360 - -
Cca11g02542 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Cca11g02542 480 MobiDBLite consensus disorder prediction 420 442 - -
Cca11g02542 480 MobiDBLite consensus disorder prediction 396 419 - -
Cca11g02542 480 ProSiteProfiles Protein kinase domain profile. 80 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02542 480 MobiDBLite consensus disorder prediction 443 480 - -
Cca11g02542 480 MobiDBLite consensus disorder prediction 15 36 - -
Cca11g02542 480 Gene3D Transferase(Phosphotransferase) domain 1 163 366 - -
Cca11g02542 480 PANTHER OS01G0588500 PROTEIN-RELATED 26 412 - -
Cca11g02542 480 SUPERFAMILY Protein kinase-like (PK-like) 55 357 IPR011009 -
Cca11g02542 480 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 26 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02542 Cca-Chr11 52575787 52578281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02542 66 386 Glycoside Hydrolase AT3G07070 51.852 2.42e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca11g02542 PK_Tyr_Ser-Thr 8.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02542 - - gmx:100305397 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02542 11 52575787 52578281 Cca11g00408 11 5576321 5578594 ECH
Cca11g02542 11 52575787 52578281 Cca05g00458 05 10030842 10033755 ECH
Cca11g02542 11 52575787 52578281 Cca11g02542 11 52575787 52578281 ECH
Cca11g02542 11 52575787 52578281 Cca08g01373 08 41360533 41363775 PCT