Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02530 ATGATGAATGGAAGGAACAGGTTCCCCTTCACTCCTTCACAGTGGCAAGAGCTTGAACACCAAGCTCTCATCTACAAATACATGGCTTCAGGCATCTCCATCCCCCCTGACCTTCTCTTCACCATCAAAAGAACATCCCATTTGGACTCCCCTCTCTCCTCAAGGCTCTTGCCTCCCCACCCCCAACACTTTGGGTGGAACTATTTGCCAATGGGGCTAGGGAGGAAAATAGACCCCGAGCCAGGGAGGTGTAGAAGAACAGATGGGAAGAAGTGGAGGTGCTCAAAGGAGGCGTATCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAaacaacaacaacaacgacaaacataaacaCAGATGCCTTATCAATCACCAAAAACAGTCCTCTTCCTGCACTCTCCCCAACCACTCATGACACTTACCATCATCATCATCACCACTCCTTCCTCTATCACCCCTCAAGACCCTCCAACGCTGTTGCTTTGTCATTCCAAGACAACAGTGCCCCCTTGTTTCTCGACACTGCTTCTTGCTCTCAGAATAACAACAACAATGACTGCAGGAGCAGGTATGTGTATGGACTGAAAGAGGAGGTGGATGAGCATGCTTTCTTCACTGAACCTTCTGGAACTATGAGAAGCTTCTCTGCTTCCTCAATGGAAGATTCTTGGCAACTCACACCACTCACTATAAGCTCCTCTTCCTCTTCAAAACAGAGGAGTTGCTCTGGCTTATCCAATGACAACAACAACGAGTACTCCTACTTGCAACTTCAGAGCCTCAGTGGCAACAACAACAAGCAGCCACAGCAAGATCATCAGGGTTGCTACATATCAGGCACTGGTGGCAGCGACATCAAGTGTGAAACGTTCATGAAACTTGGGAAAGAAGAGCCTCAGAAAACGGTTCATCGCTTCTTCGATGAATGGCCCCCCAAGAGCAGAGGATCGTGGCTTGATTTGGACGACAAATCATCCACCACCCAGCTTTCAATTTCCATTCCCACGGCTTCTCATGATTTTGCAACTTTCAGTTCAACAACACAACGAGATGGTTGA 1104 0.4683 MMNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRTSHLDSPLSSRLLPPHPQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTTTTTNINTDALSITKNSPLPALSPTTHDTYHHHHHHSFLYHPSRPSNAVALSFQDNSAPLFLDTASCSQNNNNNDCRSRYVYGLKEEVDEHAFFTEPSGTMRSFSASSMEDSWQLTPLTISSSSSSKQRSCSGLSNDNNNEYSYLQLQSLSGNNNKQPQQDHQGCYISGTGGSDIKCETFMKLGKEEPQKTVHRFFDEWPPKSRGSWLDLDDKSSTTQLSISIPTASHDFATFSSTTQRDG 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02530 367 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca11g02530 367 PANTHER - 2 358 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cca11g02530 367 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca11g02530 367 PANTHER GROWTH-REGULATING FACTOR 6 2 358 - -
Cca11g02530 367 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Cca11g02530 367 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca11g02530 367 Pfam WRC 79 121 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02530 Cca-Chr11 52443436 52445719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02530 7 121 GRF Transcription Factor Family AT3G13960 69.565 2.89e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Cca11g02530 WRC 7.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02530 - - gmx:100783524 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02530 11 52443436 52445719 Cca11g02530 11 52443436 52445719 ECH
Cca11g02530 11 52443436 52445719 Cca08g01389 08 41611055 41613276 PCT