Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02526 ATGGGAAGAAGTCCTTGTTGTTCAAAGGAAGGCTTGAACAGAGGTGCTTGGACAGCTCATGAAGACAAAATTCTGAGAGATTACATTAGAGTCCACGGTGAAGGAAGATGGAGAAACCTTCCCAAAAGAGCAGGTTTGAAAAGGTGTGGGAAAAGTTGCAGACTTCGATGGTTGAACTATCTGAGACCAGATATCAAGAGAGGAAATATTTCCTCAGACGAAGAAGAGCTCATCATCAGGCTTCACAAGCTCCTGGGAAACAGATGGTCTTTAATAGCAGGGAGGCTTCCAGGGCGAACAGACAATGAAATAAAGAATTATTGGAACACGAACCTAGGCAAAAAAGTGAAAGATGGAAACCAGAACCAAAGCACTACTACTAGTTATCGAAATGGAAACAAAACACAGAATCCAATCCCTATGCCCACTCCCTCACCCTCCCTAGATTCTCATCTTGTCCGTACAAAAGCTAGCAAGTGCTCTAAGGTATTATTCATAAACCCACTCCCTAACCCCACAATGAAATTGCATAACACCGAGGCTGAGGCTGAAGCAGAAGAAGCAATGGATGCCATAAGCAACGGCAACGGCTTCCTCTCATTTCCCAACGATGAAAAAGACCTCTCCACGGATTTGCTCATAGATTTCAACGTCGGAGATGTTTGCTTATCTGATCTTCTCAACACGGATTTGGATTTTTCAAACATGTACAATTTCACCTTCACTCATCCCGACCAGTTATCACCTTGTTCCGACCACGCCAATCACGTCTTCTCTGATCAAGTTCTCAAGGACTGGACGCAAACCGATTTTTCAGACCAAACCAACAACCTTAGTTCTTTCTCTTCCTTCCTTGAGGACGAAAAACTAAGAGACGAATAA 882 0.4354 MGRSPCCSKEGLNRGAWTAHEDKILRDYIRVHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDGNQNQSTTTSYRNGNKTQNPIPMPTPSPSLDSHLVRTKASKCSKVLFINPLPNPTMKLHNTEAEAEAEEAMDAISNGNGFLSFPNDEKDLSTDLLIDFNVGDVCLSDLLNTDLDFSNMYNFTFTHPDQLSPCSDHANHVFSDQVLKDWTQTDFSDQTNNLSSFSSFLEDEKLRDE 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02526 293 PANTHER TRANSCRIPTION FACTOR TT2 1 260 - -
Cca11g02526 293 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Cca11g02526 293 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca11g02526 293 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca11g02526 293 CDD SANT 16 61 IPR001005 -
Cca11g02526 293 MobiDBLite consensus disorder prediction 114 149 - -
Cca11g02526 293 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 260 - -
Cca11g02526 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca11g02526 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca11g02526 293 CDD SANT 71 112 IPR001005 -
Cca11g02526 293 Gene3D - 14 66 - -
Cca11g02526 293 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Cca11g02526 293 SMART sant 13 63 IPR001005 -
Cca11g02526 293 SMART sant 66 114 IPR001005 -
Cca11g02526 293 MobiDBLite consensus disorder prediction 114 138 - -
Cca11g02526 293 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca11g02526 293 Gene3D - 71 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02526 Cca-Chr11 52403230 52404402 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02526 1 116 MYB Transcription Factor Family AT4G09460 73.276 7.86e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca11g02526 Myb_DNA-binding 1.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02526 K09422 - gmx:100802704 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02526 11 52403230 52404402 Cca11g00390 11 5263724 5265228 ECH
Cca11g02526 11 52403230 52404402 Cca11g02526 11 52403230 52404402 ECH
Cca08g01393 08 41677177 41688798 Cca11g02526 11 52403230 52404402 PCT