Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02524 ATGGGGAGTAGCCTTTGTTGTTCAAAGGAGAGCTTGAATAGAGGTGTTTGGACAGCTCAAGAAGACAAAATCCTCTCAGAGTACATCAGACTCCATGGTAAAGGAAGATGGAGAAACCTTCCCAAAAGTGCAGGTTTGAAAAGATGTGGGAAAAGTTGCAGGCTTCGATGGTTAAATTATCTGAGACCAGATATCAAGAGAGGTAATATATCCTCAGATGAAGAAGAGCTCATCATCAGGCTCCACAAGCTTTTGGGCAACAGATGGTCCTTAATAGCAGGGAGGCTTCCAGGGCGAACAGACAATGAAATAAAAAATTATTGGAATAGCAAATTAAGAAAAAAGGTTAAAAATGAGGAACAAACGAGTATTTCAGGTCCAAAGAATCCAACAAAGTTGCAAGAAGCCCCCGTGGCCACTCCCCACGTTGTCCGTACAAAGGCTAGAAAGTGTTCTAAAGCATTATTCATAAACCCAGCAATGCAAGTGCCTAACAGTTCCAAGGCTGTAGCCGAGGAAGAAGCAACTAGGGTTGTGGATGACGTCAGTAACCAAATAAAATACGACAACGGCTTCTTGTCGTTTTCCAACGATTCAAAGGATTTGCTCATGGAATTTAACGTGGGGGATGTTTGCTTATCTGACCTTCTCAACTTAGATTTTTCAGACACCTATGATTTCACCTACTTACGGTAA 696 0.4195 MGSSLCCSKESLNRGVWTAQEDKILSEYIRLHGKGRWRNLPKSAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSKLRKKVKNEEQTSISGPKNPTKLQEAPVATPHVVRTKARKCSKALFINPAMQVPNSSKAVAEEEATRVVDDVSNQIKYDNGFLSFSNDSKDLLMEFNVGDVCLSDLLNLDFSDTYDFTYLR 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02524 231 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Cca11g02524 231 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca11g02524 231 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca11g02524 231 CDD SANT 17 61 IPR001005 -
Cca11g02524 231 MobiDBLite consensus disorder prediction 118 138 - -
Cca11g02524 231 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Cca11g02524 231 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca11g02524 231 Gene3D - 71 138 - -
Cca11g02524 231 PANTHER TRANSCRIPTION FACTOR TT2 1 190 - -
Cca11g02524 231 SMART sant 66 114 IPR001005 -
Cca11g02524 231 SMART sant 13 63 IPR001005 -
Cca11g02524 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca11g02524 231 CDD SANT 71 112 IPR001005 -
Cca11g02524 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca11g02524 231 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 190 - -
Cca11g02524 231 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02524 Cca-Chr11 52377529 52378822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02524 1 208 MYB Transcription Factor Family AT4G09460 46.190 1.14e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca11g02524 Myb_DNA-binding 4.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02524 K09422 - gmx:100781908 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02524 11 52377529 52378822 Cca05g00624 05 14684805 14686970 ECH
Cca11g02524 11 52377529 52378822 Cca11g02524 11 52377529 52378822 ECH