Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02521 ATGTCGGTGAATCTGACGCCGAATGCGATCCCGGCGATAGTGTCCGGCGATATGAACTCGAAGCCTCTGGTGCAGGTTCTTGATATCAAGTTGATTCCGAATAGCAAGCAGCAAGAGAGGTACCGGATTTTGCTCTCCGACGCCGTTTCCTCTCAGCACGCCATGCTCGCAACTCAGCTCAACGACCGAGTCCAAACCGGACGAGTCAAGAAAGGTTCCGTCGTTCAACTCATCGACTACATTTGCAGTCCTATTCAGAATCGCAAGATTGTTGTGGTGCTCAACATGGAAACTATAATACCGGATTGCGAGATCATTGGAAATCCAAAGACGTTTGTGGAATCTGATTTACCAACTCAGGGAGCATTACCTAATAACAATTTGGAGAACTCATTCAAGAGTAATAATGTTCATCTTCCAGCTCAAAATACAAATTGTAATATGCAGAATTTCCGGCCAACTGTTAAACCTTCATACCAACTGCCGCCACTGCCAGTTTACAAAAGCCATGGTGCGATTGTGAAAAATGAGGCCCCAGCACATATTATTCCAATAGCTGCTTTAAATCCTTATCAAGGTCGATGGGCCATCAAGGCAAGGGTAACTGCAAAAGGAGGTCTGCGCCGCTATAATAATGCTCGGGGAGATGGGAAGGTTTTCTCATTTGATCTCCTTGATTCTGATGGAGGTGAAATACGGGTAACCTGTTTTAATGCAGTTGTGGATCGCTTCTATGATGCAATTGAGATAGGTAGAGTTTACTTGATATCCAAAGGCAGCTTGAAACCTGCGCAGAAAAACTTCAACCATTTGAAGAATGAATGGGAAATTCTTTTGGATTTGGCATCTACTGTTGAACTTTGTCCAGATGAAGATGGTTCTATACCAAGACAGCAATTCTCCTTTAGGCATATCAGTGATATTGCGAATGTTGACAATAACTCTATACTTGATGTTATTGGCGTTGTGACATTTGTCAATCCATCAGTTCCCATTTTGAGGAAAAATGGGATGGAAACCCGTAGAAGAAATTTAAATATAAAGGACTGCTCTGGCAGGAGTGTTGAGCTAACTCTTTGGGGTGAATTTTGCAACAGGGAAGGCCAAAAGTTGCAAGAGATGGTCAATGCTGGGTTTTTCCCCATTCTGGCAATCAAAGCTGGGAAGGTCAATGACTTCACTGGGAAATCTATTGGGACTATTTCTTCTACACAGCTTTTCATAAATCCAGATTTCTCTGAGGCACGTAGCTTAAGGGACTGGTTTGATCGAGGGGGAAAAGATTCTGCTTCTGTGTCCATTTCTAAGGACATTATACCTGGAGTACCCAAGAACGATGTACGTAAAACTGTGTCTCAGATCAAGAATGAAGGTCTGGGGCGGTCAGATAAGCCAGATTGGATAACGGTGAGGGCAAGAATTTCTTTCATCAAGACAGATACGTTTTGTTACCCAGCTTGCCCTCTTTTGATTGGAGATCGGCAGTGCAACAAGAAAGTGACTAGGTCAGACAACACAAGATGGCAATGTGATAGATGTAACCAAGAATTTGAGGAGTGTGACTACCGATATCTCCTTCAAGCTCAAATTCTGGATCCTACAGGAATAGCTTGGGTAACTGCTTTTCAGGAATCAGGGGAAGATATTTTGGGTTACTCGGCTAAGGAGCTGTACATGTTGAAGTACGAGCAGCAGGATGATGAGAAGTTTGGAGGAATAATCAAGAGTAGACTCTTCAACCAATTTGTCTTGAGGCTAAAAATTAAAGAGGAATTGTATGGTGATGAACAGAGGGTGAAGATTACAGTAGTGAAGGCAGATAAGGCGGATTATGCTTCTGAGAGTAGACACATGCTTGATTTGATTTCGAATTTGTGGAGGCACTAG 1887 0.4303 MSVNLTPNAIPAIVSGDMNSKPLVQVLDIKLIPNSKQQERYRILLSDAVSSQHAMLATQLNDRVQTGRVKKGSVVQLIDYICSPIQNRKIVVVLNMETIIPDCEIIGNPKTFVESDLPTQGALPNNNLENSFKSNNVHLPAQNTNCNMQNFRPTVKPSYQLPPLPVYKSHGAIVKNEAPAHIIPIAALNPYQGRWAIKARVTAKGGLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYDAIEIGRVYLISKGSLKPAQKNFNHLKNEWEILLDLASTVELCPDEDGSIPRQQFSFRHISDIANVDNNSILDVIGVVTFVNPSVPILRKNGMETRRRNLNIKDCSGRSVELTLWGEFCNREGQKLQEMVNAGFFPILAIKAGKVNDFTGKSIGTISSTQLFINPDFSEARSLRDWFDRGGKDSASVSISKDIIPGVPKNDVRKTVSQIKNEGLGRSDKPDWITVRARISFIKTDTFCYPACPLLIGDRQCNKKVTRSDNTRWQCDRCNQEFEECDYRYLLQAQILDPTGIAWVTAFQESGEDILGYSAKELYMLKYEQQDDEKFGGIIKSRLFNQFVLRLKIKEELYGDEQRVKITVVKADKADYASESRHMLDLISNLWRH 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02521 628 Gene3D - 3 113 IPR012340 -
Cca11g02521 628 CDD RPA1_DBD_A 184 287 - -
Cca11g02521 628 SUPERFAMILY Nucleic acid-binding proteins 299 427 IPR012340 -
Cca11g02521 628 Pfam Replication factor-A protein 1, N-terminal domain 5 99 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cca11g02521 628 Gene3D - 294 433 IPR012340 -
Cca11g02521 628 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Cca11g02521 628 Gene3D - 180 291 IPR012340 -
Cca11g02521 628 CDD RPA1N 9 100 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cca11g02521 628 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 623 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cca11g02521 628 Pfam Replication factor-A C terminal domain 467 618 IPR013955 -
Cca11g02521 628 CDD RPA1_DBD_B 316 423 - -
Cca11g02521 628 SUPERFAMILY Nucleic acid-binding proteins 181 294 IPR012340 -
Cca11g02521 628 Pfam OB-fold nucleic acid binding domain 196 271 IPR004365 GO:0003676
Cca11g02521 628 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 622 - -
Cca11g02521 628 SUPERFAMILY Nucleic acid-binding proteins 448 626 IPR012340 -
Cca11g02521 628 CDD RPA1_DBD_C 451 624 IPR013955 -
Cca11g02521 628 Gene3D - 440 625 IPR012340 -
Cca11g02521 628 Pfam Replication protein A OB domain 305 409 IPR031657 -
Cca11g02521 628 PANTHER REPLICATION FACTOR A 1, RFA1 2 622 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02521 Cca-Chr11 52333608 52336210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02521 26 622 Core DNA Replication Machinery Family AT2G06510 68.455 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02521 K07466 - gmx:100792409 998.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02521 11 52333608 52336210 Cca11g02521 11 52333608 52336210 ECH