Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02519 ATGGTTAGGGTGCGTGTGTGTTTTGAGAAAGGCGACAATGGAAACGGTGAGAACGAGAGGTGGAAATTTTTGGCATATTTGCTTATGTCTGACGTGGCAGCTTCTCCATTGGATTCGATAGATAAGCCCAAATTTGATTGCACTTGCGGGCTCTGTCTTCAGACTTCAGCCACATTTTTTCCCGCCTGTTGTTTCGACCGCTCCAGAATCTGTCTTGTCGACAACATATTCTCCAACTTGTTCTTCACTCAATTTCCTCTGCCCATTTCACCCCAAAATCCTGAAATGGGTGATTTCCAAGGCCCCATCATTGTGTCACCCCCTCCTCCCTCTTCCTCGGACAAGTCCAGCACAACCATGTTATATTATGGCCTAGTAGTAGTAGGGATTGCAGCCATGACATTAGCCCTATACAACTTCATCATCATCAAGCGAAGCAGGAGGCGCCACATGCAATCACAGGCTGAAGGGTCAAATGGGTTGGTCGAGGTGGTAATGGAAAGGAGCATTGATGATACCAACTGCCAAAGCAACTCCAACTTGCTCACAAGCTTCAAGTACAAGGAGAAAGAAGCAGGAAAAGAAGGATTTGGGGATGATTACGAATGCCCCGTTTGCTTATCCGGTTTTGAAGAAGGTGAAGATGTGAGGAAGCTACCACAGTGCAAACACTCGTTCCATGCTGCATGCATAGACATGTGGCTTTACTCTCACTTGGATTGCCCAATTTGTCGAACACCTGTTGGACCATTTTGTGAGCAGGAGAATTCTGGCTCCGGTGGTGCCCTCTTGGTATGA 798 0.4712 MVRVRVCFEKGDNGNGENERWKFLAYLLMSDVAASPLDSIDKPKFDCTCGLCLQTSATFFPACCFDRSRICLVDNIFSNLFFTQFPLPISPQNPEMGDFQGPIIVSPPPPSSSDKSSTTMLYYGLVVVGIAAMTLALYNFIIIKRSRRRHMQSQAEGSNGLVEVVMERSIDDTNCQSNSNLLTSFKYKEKEAGKEGFGDDYECPVCLSGFEEGEDVRKLPQCKHSFHAACIDMWLYSHLDCPICRTPVGPFCEQENSGSGGALLV 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02519 265 Pfam Ring finger domain 202 245 IPR001841 -
Cca11g02519 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 250 IPR013083 -
Cca11g02519 265 SUPERFAMILY RING/U-box 197 251 - -
Cca11g02519 265 ProSiteProfiles Zinc finger RING-type profile. 203 245 IPR001841 -
Cca11g02519 265 SMART ring_2 203 244 IPR001841 -
Cca11g02519 265 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 105 252 - -
Cca11g02519 265 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 105 252 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02519 Cca-Chr11 52330464 52332537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02519 125 248 C3H Transcription Factor Family AT5G17600 38.346 4.15e-19 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02519 - - gmx:102668213 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02519 11 52330464 52332537 Cca11g02519 11 52330464 52332537 ECH
Cca11g02519 11 52330464 52332537 Cca08g01407 08 42063464 42064414 PCT