Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02516 ATGCTGACGTGCATAGCTCGTCCAAAGAAACCTGATGAGTCGGATCCGAACAACGCGACAAGCGCCGCGAAAACTCAGGCCGTCAAATCACTCACTTCTCAGATTAGGGATATGGCGTTGAAGGCTTCGGGAGCGTACAAGCATTGCGCTCCGTGCACGGGGCCGACAGCGCAGGGGAGAGTGCGGAGCAATACGGAGTCGGACGCGGATTCGGACCGTTTCCGGTGGTCGTACCGGAGGACAGGGAGTTCGAGCTCGACGGCGACGAGGACGTGGGGGAAGGAGATGGAGGCGCGGCTGAAGGGAATTTCGAGTGGGGAGGGGACGCCGAACTCCACCAGCGGGCGGCGGACGGAGCCGGTGGTGCTGTTCGTCGAGGAGAATGAGCCTAAGGAGTGGGTGGCGCAGGTGGAGCCCGGCGTTTTGATTACGTTCGTGTCGTTGCCACGTGGCGGGAACGATCTCAAGCGCATACGCTTCAGTCGAGAGATGTTCAATAAATGGCAAGCTCAAAGATGGTGGGCAGAGAACTACGACAAGGTCATGGAACTTTACAATGTTCAAAGGTTTAACCGGCAAGCATTCCCTCTTCCAACGCCACCAAGATCTGAAGACGAGAGCTCAAAGCTTGAATCAGCGGAAGAAAGCCCTGTAACGCCTCCACTGAGCAGGGAACGGTTACCTCGTAATATGTATCGTCCAACAGGGATGGGAATGGGATACTCATCCTCAGATTCCTTTGATCACCAATCAATGCAATCCCGGCATTTCTATGACTCAAATGGTATGAACTCAACCCCAAAAGTGTCCACCATTAGTGCGGCTAAGACAGAGATATCATCCATGGATGCTTCTATGAGAAGTAGCTCATCGAGAGAGGCCGATCGCTCGTGTGATCTATCAATCAGCAATGTTAGTGATTTGGAGACAGAATGGGTTGAACAGGATGAACCTGGGGTTTACATTACCATCAGAGCATTGCCAGGTGGCGCAAGGGAGCTCAAACGAGTCAGGTTCAGCCGAGAAAGATTTGGGGAGATGCATGCTAGATTATGGTGGGAGGAGAACCGTGCCAGAATACATGAACAATACTTGTGA 1098 0.5319 MLTCIARPKKPDESDPNNATSAAKTQAVKSLTSQIRDMALKASGAYKHCAPCTGPTAQGRVRSNTESDADSDRFRWSYRRTGSSSSTATRTWGKEMEARLKGISSGEGTPNSTSGRRTEPVVLFVEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFNRQAFPLPTPPRSEDESSKLESAEESPVTPPLSRERLPRNMYRPTGMGMGYSSSDSFDHQSMQSRHFYDSNGMNSTPKVSTISAAKTEISSMDASMRSSSSREADRSCDLSISNVSDLETEWVEQDEPGVYITIRALPGGARELKRVRFSRERFGEMHARLWWEENRARIHEQYL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02516 365 Pfam Transcription factor BRX N-terminal domain 20 52 IPR027988 -
Cca11g02516 365 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 365 IPR044532 -
Cca11g02516 365 ProSiteProfiles BRX domain profile. 131 186 IPR013591 -
Cca11g02516 365 MobiDBLite consensus disorder prediction 46 70 - -
Cca11g02516 365 PANTHER PROTEIN BREVIS RADIX-LIKE 4 1 365 - -
Cca11g02516 365 MobiDBLite consensus disorder prediction 1 28 - -
Cca11g02516 365 MobiDBLite consensus disorder prediction 194 248 - -
Cca11g02516 365 Pfam Transcription factor regulating root and shoot growth via Pin3 131 185 IPR013591 -
Cca11g02516 365 Pfam Transcription factor regulating root and shoot growth via Pin3 309 364 IPR013591 -
Cca11g02516 365 ProSiteProfiles BRX domain profile. 310 365 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02516 Cca-Chr11 52304962 52309310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02516 1 365 Major Intrinsic Protein MIP AT1G31880 45.596 3.57e-93 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02516 - - gmx:100794109 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02516 11 52304962 52309310 Cca11g02516 11 52304962 52309310 ECH
Cca11g02516 11 52304962 52309310 Cca08g01409 08 42092112 42100404 PCT