Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02513 ATGAAGTCGCTCTTCTTTTCAAATCCTCCTGACACTATGTACAATTATTCACAAGTTGATTGCAGTGATTCAATGGCTCGTACTCCTTATCCTTGTGGTGATCCTTATTTTGGTAGTTCATTTGTTGCTTATGGACCACAGGCTATTAATCAACCCCAAATTTTACCCCAGATGCTGGGATTAGCATCCACCAGAATTGCATTACCAGTTGAGCTTGCAGAAGATGGGCCCATTTATGTCAATGCAAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAGGCTCAAAACAAACTCATCAAAAGTCGTAAGCCATATCTTCACGAGTCTCGGCACCGCCACGCATTGAAAAGGGTTAGGGGGTCTGGGGGACGCTTTCTTAGTGCCAAACAGCTGCAACAGTCTAACACAGAACTTGCCACTAATGCCCATTCAGGTCCGGACCCTGTCAACTTTTATCAGGAGAAAGATGCATCAGAGGTGGAAAGTCATCCCTCAAGAACTGGAGAAAATGCATCTATCACAGCCATCTCTGGCTTAACAAGTATGTCCAGTAACCGTGTCAATTTCAGGCAGCCTGAGCACAACTTCTTGGGTAGCTCCCCAAACATGGGTGGATCATCACAGTGGAATGGGGGACTAACCTTTGGGGGTGGAGCTCGGCAATGTGCTTCAGTTGGCCGGTGA 702 0.4644 MKSLFFSNPPDTMYNYSQVDCSDSMARTPYPCGDPYFGSSFVAYGPQAINQPQILPQMLGLASTRIALPVELAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALKRVRGSGGRFLSAKQLQQSNTELATNAHSGPDPVNFYQEKDASEVESHPSRTGENASITAISGLTSMSSNRVNFRQPEHNFLGSSPNMGGSSQWNGGLTFGGGARQCASVGR 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02513 233 Gene3D - 74 136 - -
Cca11g02513 233 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 229 IPR001289 GO:0003700|GO:0006355
Cca11g02513 233 PRINTS CCAAT-binding transcription factor subunit B signature 77 99 IPR001289 GO:0003700|GO:0006355
Cca11g02513 233 PRINTS CCAAT-binding transcription factor subunit B signature 108 131 IPR001289 GO:0003700|GO:0006355
Cca11g02513 233 MobiDBLite consensus disorder prediction 141 175 - -
Cca11g02513 233 SMART cbf3 73 134 IPR001289 GO:0003700|GO:0006355
Cca11g02513 233 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 1 229 - -
Cca11g02513 233 ProSiteProfiles NF-YA/HAP2 family profile. 74 134 IPR001289 GO:0003700|GO:0006355
Cca11g02513 233 ProSitePatterns NF-YA/HAP2 subunit signature. 79 99 IPR018362 GO:0003677|GO:0016602
Cca11g02513 233 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 77 131 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02513 Cca-Chr11 52281823 52286035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02513 32 146 CCAAT-HAP2 Transcription Factor Family AT1G54160 58.974 4.38e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Cca11g02513 CBFB_NFYA 4.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02513 K08064 - gmx:100792905 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02513 11 52281823 52286035 Cca11g02513 11 52281823 52286035 ECH