Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02511 ATGATTAATGATTTACCCACAATATTTGAGGTTTTGACTGGAAGTGCAAAGAAACAGACGAAGGAAAAGTCATCCATTTCAAACCACACCAACAACAAATCAAAATCCACTTCAAAAGGGCGAGGATCTGAATCAGGGAAGTATTCAAAGCAAATAAAGGATGAGGAAGATGAGGTACTGGATGAAGAAGATGATGAGGAGCATGGGGAGACATTGTGTGGTGCATGCGGGGAGAACTATGCATCTGATGAGTTCTGGATTTGTTGTGACATATGTGAGAAGTGGTTCCATGGTAAGTGTGTGAAGATCACTCCTGCAAGGGCCGAGCATATCAAGCAGTATAAGTGCCCCTCGTGCAGCAACAAGAGAGTTCGACCTTGA 381 0.4331 MINDLPTIFEVLTGSAKKQTKEKSSISNHTNNKSKSTSKGRGSESGKYSKQIKDEEDEVLDEEDDEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRVRP 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02511 126 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 1 126 - -
Cca11g02511 126 PANTHER CPG BINDING PROTEIN 1 126 IPR045104 GO:0006355|GO:0042393
Cca11g02511 126 MobiDBLite consensus disorder prediction 18 45 - -
Cca11g02511 126 CDD PHD_AL_plant 72 122 IPR044104 -
Cca11g02511 126 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 121 IPR013083 -
Cca11g02511 126 Pfam PHD-finger 73 122 IPR019787 -
Cca11g02511 126 MobiDBLite consensus disorder prediction 16 66 - -
Cca11g02511 126 ProSitePatterns Zinc finger PHD-type signature. 73 119 IPR019786 -
Cca11g02511 126 SUPERFAMILY FYVE/PHD zinc finger 62 123 IPR011011 -
Cca11g02511 126 ProSiteProfiles Zinc finger PHD-type profile. 70 122 IPR019787 -
Cca11g02511 126 SMART PHD_3 72 120 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02511 Cca-Chr11 52267703 52271400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02511 1 125 Alfin-like Transcription Factor Family AT3G42790 69.600 4.15e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Cca11g02511 PHD 4.8e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02511 - - gmx:100500110 211.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02511 11 52267703 52271400 Cca11g02511 11 52267703 52271400 ECH