Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02504 ATGGTTTGGTTTCAATGCGAAGATTGTGGAGACAACCTCAAAAAACCCAAGTTGTCTAGCCACTTCCGAACTTGCTCCGCCTACAAATTGTCGTGCATTGACTGTGGTGAAATATTTGGGCGCGACACCGTTCAGGATCACATGCAGTGTATCACAGAAGCGGAAAAATATGGTCCAAAAGGCCAAGGCAAATCTTTGAATGTTGCAACAGCCAAGCCAAATAAGGATAGCAAGGAAAGGCCTGAAGTTGATATTAATGTGGGGTTATCTGAGCGGCCTCCTTGGTTCTGTAGTCTATGCAATACTAAAACTACAAGTAAGCAAACACTTCTTCTCCATGCTGATGGAAAGAAACACAGGGCAAAGGCCCGAGCATTCCATGCTTCAAAGCAACAACCTGTTGAGGCAGACAAATCTTCCCCTGATGCTAAGGTTGTTGCGGAGACTGCTCCTAATGATGAGGCAAGAGACAACAAAAATGTTGAGCTTCCAAAATTGCCAGAGTCTGCTAAACAAGATAACTTGAAACCAGGGAATGAAATTTCTTCAGCAAAGAAAAAGAGGAAACTTGATGAATTGGAGGATGACCTTGTTAAAAAGAGCAGGAATGACACTTCAGTTGACATGGGAAATGGAGAAGTAATTCAGGGTGAAGAAATAAAAGGAGAGAGCAATTTGAAGAGAAAAGGGATGTTGGAATCTCACTGTACAAGTGCTGTAAAAAATAAGATAAAATGGAAGAAGTTTATCAAATCAGCCTTGAAATCTCATCCTGATGGAATTTTGAAGATGAAGAAACTGAGAAAAGCTGTTTTCAAAGAACTGCAGGAGTCTGGCATTGTAATGGATGAAGCTGAAATGAGTGAGGCGCTTGAGCAGAAGATCAATTCCAGCTCCAGATTTGCAGTTGAGAACAAGTACGTGCGATTGCTGGCCAAAGATTGA 945 0.418 MVWFQCEDCGDNLKKPKLSSHFRTCSAYKLSCIDCGEIFGRDTVQDHMQCITEAEKYGPKGQGKSLNVATAKPNKDSKERPEVDINVGLSERPPWFCSLCNTKTTSKQTLLLHADGKKHRAKARAFHASKQQPVEADKSSPDAKVVAETAPNDEARDNKNVELPKLPESAKQDNLKPGNEISSAKKKRKLDELEDDLVKKSRNDTSVDMGNGEVIQGEEIKGESNLKRKGMLESHCTSAVKNKIKWKKFIKSALKSHPDGILKMKKLRKAVFKELQESGIVMDEAEMSEALEQKINSSSRFAVENKYVRLLAKD 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02504 314 MobiDBLite consensus disorder prediction 121 192 - -
Cca11g02504 314 Gene3D Classic Zinc Finger 89 132 - -
Cca11g02504 314 MobiDBLite consensus disorder prediction 149 166 - -
Cca11g02504 314 Gene3D - 1 50 - -
Cca11g02504 314 Pfam Zinc-finger of C2H2 type 95 119 - -
Cca11g02504 314 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 1 26 - -
Cca11g02504 314 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 1 311 IPR039999 GO:0003677
Cca11g02504 314 Coils Coil 183 203 - -
Cca11g02504 314 SUPERFAMILY beta-beta-alpha zinc fingers 81 127 IPR036236 -
Cca11g02504 314 Pfam LYAR-type C2HC zinc finger 30 57 IPR014898 -
Cca11g02504 314 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Cca11g02504 314 SUPERFAMILY beta-beta-alpha zinc fingers 1 26 IPR036236 -
Cca11g02504 314 MobiDBLite consensus disorder prediction 61 81 - -
Cca11g02504 314 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 27 51 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02504 77 222 C2H2 Transcription Factor Family AT2G19380 43.151 3.32e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02504 K15263 - gmx:100790272 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02504 11 52216568 52220129 Cca11g02504 11 52216568 52220129 ECH