Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02502 ATGTTATGTTTTCAGCCACCTCCAATCAAGCCTTCAGACGACCAGTTAAGTTTGGCAGACATAGATGTGATCAAAGTTGTTGGAAAGGGAAATGGAGGGGTAGTCCAATTGGTGCAACACAAATGGACAAGTCAGTTTTTCGCATTGAAGGTAATTCAAATGAATATTGAGGAGTCCATGCGCAAGCAGATTGCACAAGAGCTGAAAATTAATCAACAAGCACAATGTCCATATGTTGTTGTCTGCTACCAATCATTCTATGAAAACGGTGTCATATCAATCATCTTAGAATACATGGATGGAGGTTCCTTAGCTGATCTTCTGAAGAAAGTTAAAACAATTCCAGAGCCTTTTCTTGCTGCCATCTGTAAACAGGTGCTGAAGGGTTTAATCTATCTTCACCATGAAAAGCACATTATCCACAGAGACTTAAAACCTTCTAATTTGTTGATAAATCACATAGGTGAAGTAAAGATTACTGACTTTGGTGTGAGTGCAATTATGGAAAGTACATCTGGTCAAGCAAATACTTTCATTGGCACATACAACTATATGTCTCCAGAGAGAATCAACGGAAGCCAGCGAGGCTACAACTACAAAAGTGATATATGGAGTCTGGGACTAATACTGCTCGAGTGTGCGTTGGGGCGGTTTCCATATACACCGCCTGATCAAAGTGATAGATGGGAGAGCATTTTTGAGCTTATTGAAACCATTGTCGATAAACCTCCTCCTAGTCCTCCATCGGAACAATTTTCTCCAGAATTTTGCACATTTATCTCAGCATGGTAA 792 0.4003 MLCFQPPPIKPSDDQLSLADIDVIKVVGKGNGGVVQLVQHKWTSQFFALKVIQMNIEESMRKQIAQELKINQQAQCPYVVVCYQSFYENGVISIILEYMDGGSLADLLKKVKTIPEPFLAAICKQVLKGLIYLHHEKHIIHRDLKPSNLLINHIGEVKITDFGVSAIMESTSGQANTFIGTYNYMSPERINGSQRGYNYKSDIWSLGLILLECALGRFPYTPPDQSDRWESIFELIETIVDKPPPSPPSEQFSPEFCTFISAW 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02502 263 Pfam Protein kinase domain 23 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02502 263 SMART serkin_6 21 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02502 263 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Cca11g02502 263 SUPERFAMILY Protein kinase-like (PK-like) 14 261 IPR011009 -
Cca11g02502 263 ProSiteProfiles Protein kinase domain profile. 21 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02502 263 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Cca11g02502 263 CDD PKc_MAPKK_plant_like 36 262 - -
Cca11g02502 263 PANTHER MAP KINASE KINASE 6 262 - -
Cca11g02502 263 Gene3D Phosphorylase Kinase; domain 1 8 100 - -
Cca11g02502 263 Gene3D Transferase(Phosphotransferase) domain 1 101 263 - -
Cca11g02502 263 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 6 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02502 Cca-Chr11 52188970 52193994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02502 8 262 MAP Kinase Kinase Gene Family AT4G29810 71.765 7.94e-142 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Cca11g02502 Pkinase 2.4e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02502 K20603 - gmx:100789734 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02502 11 52188970 52193994 Cca11g02502 11 52188970 52193994 ECH
Cca11g02502 11 52188970 52193994 Cca08g01417 08 42336373 42341143 PCT