Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02501 ATGGAGGAAATATCTTCGAGTGTTGCAGTGCCTTTTACACTTGGTGTTGGAAATTTGATTCAAAAGGAGTCTGCAGTGACTACTCACATGGAGATAACTGGGCTGAAGCTTATGGCAAATACCGCAGCAGCAACTTTGATGTTGAATCCTGCGGTGGAGTGTTGTCAATCATGTTCTGTTGGAAGTGAAAACCATGCAGATATTAGTCTGCAGCATCAGATTACAGTATCTGCGGAGGTAAAGGAGAATCAAGTTGGAACTTCCCTTGTCTCAGAAATGGTTATCGAATGTGAGAGTAATTGGGTCTTGAATGAAAGCCATAATATGGCTAGAAAGGAAGATGAAATAATGTTAGCAGTGGATTTTCAGTGTCTTCGTAATTCAAGCTCTCAACCTGTGGCTAATGGCAAAAGTGCTCCTTGTAGGGAGGAAGCTGTGTTGTTGAAGACTAGTTATTCTGAAATAGATTCACCAATCATCATCAAGGTTGATGATGTTGATATTCATGGCAAGTCTGGGATAAAGGAGGCATGTCCATCAATGAAGCCGGTGGAGAACACAGTTTCTGTTGCAATGGATATTACTAGTGAGGATCAATGTGGATCAGATGAGTCGGATCCTAAACCATCTGCTATGCCTCTTGATCAGTTGCCAAGGGAGAATAAAACAATGAGAACAAGCAACCAGAATGCTTTGGATTTGAATAGTGGCCCTCTCTGGGGTTGCTCATCAATTTGTGGAATGAGACAAGAGATGGAAGATGCTATTTCTGTTAGGCCTCAACTTTTTCAAGTTCCTTCACAGatgctaatgaatgatcatgtgaatgagaatgataaACATTCACTAGCCCACTTTTTTGGTGTCTATGATGGACATGGGGGCCTTCAGGTTGCTAATTACTGCCAGGAGCATCTTCATTCGGTATTGATTGAGGAGATAGAGGCTGCACAATCAAGTTTGGTGGAAACAAATGCGAGAGATTGGCAAGACCGTTGGAAGAAAGCATTCATCAATTGTTTTCAGAAAGTAGATAACGAGGTTGGAGGAATTGGTGCAAGAAATAGTGGAAACAACAGTGGTGGATCTGAGTCTAATATTGAACCTGTTGCTCCCGAGACTGCTGGCTCCACTGCAGTGGTAACCATTTTAAGTCAAACCCACATAATAGTTGCAAATTGTGGGGACTCAAGAACTGTCTTATACCGTGGAAAAGAAGCCATGCCGTTGTCTTCTGACCACAAACCAAATAGAGAGGACGAGCGGGCAAGGATAGAAGCTGCAGGAGGAAGAGTCATACATTGGAAAGGATACAGAGTTCTTGGTGTCTTGGCAATGTCAAGGTCCATAGGTGATAGATACCTGAAACCATGGATAATTCCAGATCCTGAAGTGAGTATTGTACGCCGAGAGAAAAACGATGAGTGTCTTATTCTAGCAAGTGATGGTTTGTGGGATGTAATGACAAATGAAGAAGCCTGCGAGGTTGCAAAGAAACGAATCCTTCTTTGGCACAAGAAGTATGGTGAAAACGGAGCTACAGAACACAGTGAAGGAGCTGATCCTGCATCTCAGTCTGCTGCTGAGTATCTAACTAAACTTGCCATCCACAGGGGAAGCCAAGATAACATCTCTGTAATTGTGATAGACTTAAAGCCTCAAAGAAAGATTAAGAGAAAGGCATGA 1686 0.4187 MEEISSSVAVPFTLGVGNLIQKESAVTTHMEITGLKLMANTAAATLMLNPAVECCQSCSVGSENHADISLQHQITVSAEVKENQVGTSLVSEMVIECESNWVLNESHNMARKEDEIMLAVDFQCLRNSSSQPVANGKSAPCREEAVLLKTSYSEIDSPIIIKVDDVDIHGKSGIKEACPSMKPVENTVSVAMDITSEDQCGSDESDPKPSAMPLDQLPRENKTMRTSNQNALDLNSGPLWGCSSICGMRQEMEDAISVRPQLFQVPSQMLMNDHVNENDKHSLAHFFGVYDGHGGLQVANYCQEHLHSVLIEEIEAAQSSLVETNARDWQDRWKKAFINCFQKVDNEVGGIGARNSGNNSGGSESNIEPVAPETAGSTAVVTILSQTHIIVANCGDSRTVLYRGKEAMPLSSDHKPNREDERARIEAAGGRVIHWKGYRVLGVLAMSRSIGDRYLKPWIIPDPEVSIVRREKNDECLILASDGLWDVMTNEEACEVAKKRILLWHKKYGENGATEHSEGADPASQSAAEYLTKLAIHRGSQDNISVIVIDLKPQRKIKRKA 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02501 561 SUPERFAMILY PP2C-like 237 553 IPR036457 -
Cca11g02501 561 Pfam Protein phosphatase 2C 263 544 IPR001932 -
Cca11g02501 561 ProSitePatterns PPM-type phosphatase domain signature. 286 294 IPR000222 GO:0043169
Cca11g02501 561 SMART PP2C_4 229 549 IPR001932 -
Cca11g02501 561 ProSiteProfiles PPM-type phosphatase domain profile. 239 551 IPR001932 -
Cca11g02501 561 PANTHER ALPHABET, ISOFORM E-RELATED 113 560 - -
Cca11g02501 561 MobiDBLite consensus disorder prediction 197 216 - -
Cca11g02501 561 CDD PP2Cc 241 551 IPR001932 -
Cca11g02501 561 Gene3D - 226 561 IPR036457 -
Cca11g02501 561 PANTHER PROTEIN PHOSPHATASE 2C ABI2-LIKE PROTEIN 113 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02501 Cca-Chr11 52184382 52188594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02501 225 560 PP2C-type Phosphatase Gene Family AT4G26080 57.895 2.92e-135 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02501 K14497 - gmx:100789207 897.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02501 11 52184382 52188594 Cca11g02501 11 52184382 52188594 ECH
Cca11g02501 11 52184382 52188594 Cca08g01418 08 42341475 42345072 PCT