Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02496 ATGTCCACACCGCCACCGAGATCGGTTGCCGTTGCCGTGAGCGGCGGCGTGAGGGGTAGCCGGCGAGCGGTGCAGTGGGCGGTGGAGAATCTGGTCCCTCAGGCGGATAGGTTCATCTTGGTTCACGTCATCCCCCCAATAACTTCAATTGCAACACCAACTGGAGAGTATATTCCCGTTTCGGAAGCAGACGCCGATGTTTTAGCATCTTGTGTGCAGGATGTCAAACTAAAATCTCAACAAATCTTCCTTCCCTTCACCAAACTCTGCGATTCGAACACGATGGAAACCGTACTGCTAGAAGATGACAATGTTGCAGAAGCACTTCTTAGCTTTATTTCGGAATCCAGGGTCCAAACATTAGTGCTGGGTTCTGACTCGTCAAATTTTATAACAAGGAAGCTAAAAGGACCTGGAATACCAACTACCATTCTAAGATGTGCTCCTGATGGTTGTGATGTATATGTTGTAGCTAGAGATAGAATTATATCAAAGTTGGCTGATTTTTCATCTTCACATTCTCATGAAACTAGCCAAAGGTACTTCATGTCTACTAAAGTAAATAAAGCAGACAATGATGCTGGTATTGGTAGAGAAATGTCTGGAATTAGTTCATCCTCAACAGAACCTAAAATTCTAAAGAATTTCAAATTTTTATCAATATCTGAGCGTAGTTACATTGGTCTGCAAACATTTAGTCATCGTAGGGATTCTTTTGAAAATTCTACCAAAAATGAAGAAGAAAATCCAGAAAACTGTGGAGATGATATTGAAGCTATCAGCCTCCATTCATTTGATTCCATTGCTTCTGCACAACGTGAACAGTTAGTCATGCAACAAGAAGTGGAACGGCTGCAGCAGGAGTTGCAAAATACTATCGCCATGTACAAACAGGTTTGTGAAGATCTGGTTCAAGCTCAAAACCAGGCCCTTTTACTTTCTTCTGAATCTCTTGAAGAAACTAAAATAGTAAATGCTTCCCTAAAAAGAGAAGAGACTTTGAGAAAGATTGCTGCTGAAGAGAAAACAAAGTATTTAAAAGTGATGAAGGAACTTGAGGAGGCGAAAAGTAAGTTTGCCAAAGAATCATATGAAAGACAGATGGCTGAACTTGATGTCCTTAGAGAATCAATAGAAAAACAGAGAATTGTCGATACATTGCTCTCAAATGACAGAAGATACAGAAAATACACCATGGATGAAATCAAGATAGTGACGAACTTCTTTGCTGAGGATTTGATAATTGGTGAAGGAGGATATGGGAAAGTTTATAAGTGTAATCTTGATCACACACCAGTAGCTGTAAAGGTTCTGCATCAGGATGCAATCAACAAGAAAGAGGAGTTTCTGAAAGAGGTTGAGATTCTTAGTCAACTACATCACCCTAATATGGTCTTGTTACTAGGAGCCTGTCCGGAGAATCGTTGCCTTGTTTACGAGTACATGGAAAATGGAAGTTTAGAAGACTACATTCTCAACAAAAATAGCAAACCACCACTTCCTTGGTTTTTTCGATTTCGTATAGCTTTTGAAATGGCTTGTGGACTCTCATTCTTGCATAATTCGAAGCCAGAGCCTATTGTTCATCGAGATATAAAACCTGGCAATATCTTGTTAGACAGAAATTATGTGAGCAAAATTTCAGATGTTGGTCTGGCTAAACTCCTTGCAGAAGTCGTGCCTGACAATATCACAGAGTACAGAGAATCAATGCTTGCCGGTACTCTGCATTACATGGACCCAGAGTATCAGAGAACTGGCACTGTCCGACCAAAATCAGATGTATATGCTTTCGGAGTTATAACTCTGCAATTGATAACTGGTCGCCATGCACGTGGACTCATTATGACTGTTGAAGATGCAATCAGAAATGGTTCCTTCCGTGATATTTTAGACACATCAGCTGGAGATTGGCCACTAGATGAGACAGTGGAATTGGCTAAAGTTGCCCTTAAATGCACTGCCCTCAGATGCAGAGATAGACCAGAACTTGATACTGAAGTTCTTCCACTGCTCAAAAGATTTTTTGATGCGGCAAATGCTAGTGCAAGGATGGGAAGAAATAGTGCCAGTGCACCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGATGATCCATATATTGCTGCGGATGGTTTCACTTATGAGTACATAGCAATCAAGGCATGGCTTAGCAAACACAATGTATCACCGATGACAAAGCTTAAACTCCAGCATTCTGTGTTGACTCCAAACCATACTTTACGTTCTGCCATTCAGGAGTGGAAGTCAGGAGTGACCTTTTGA 2292 0.4106 MSTPPPRSVAVAVSGGVRGSRRAVQWAVENLVPQADRFILVHVIPPITSIATPTGEYIPVSEADADVLASCVQDVKLKSQQIFLPFTKLCDSNTMETVLLEDDNVAEALLSFISESRVQTLVLGSDSSNFITRKLKGPGIPTTILRCAPDGCDVYVVARDRIISKLADFSSSHSHETSQRYFMSTKVNKADNDAGIGREMSGISSSSTEPKILKNFKFLSISERSYIGLQTFSHRRDSFENSTKNEEENPENCGDDIEAISLHSFDSIASAQREQLVMQQEVERLQQELQNTIAMYKQVCEDLVQAQNQALLLSSESLEETKIVNASLKREETLRKIAAEEKTKYLKVMKELEEAKSKFAKESYERQMAELDVLRESIEKQRIVDTLLSNDRRYRKYTMDEIKIVTNFFAEDLIIGEGGYGKVYKCNLDHTPVAVKVLHQDAINKKEEFLKEVEILSQLHHPNMVLLLGACPENRCLVYEYMENGSLEDYILNKNSKPPLPWFFRFRIAFEMACGLSFLHNSKPEPIVHRDIKPGNILLDRNYVSKISDVGLAKLLAEVVPDNITEYRESMLAGTLHYMDPEYQRTGTVRPKSDVYAFGVITLQLITGRHARGLIMTVEDAIRNGSFRDILDTSAGDWPLDETVELAKVALKCTALRCRDRPELDTEVLPLLKRFFDAANASARMGRNSASAPSQYYCPILQEIMDDPYIAADGFTYEYIAIKAWLSKHNVSPMTKLKLQHSVLTPNHTLRSAIQEWKSGVTF 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02496 763 CDD STK_N 8 159 - -
Cca11g02496 763 ProSitePatterns Protein kinases ATP-binding region signature. 415 436 IPR017441 GO:0005524
Cca11g02496 763 ProSitePatterns Serine/Threonine protein kinases active-site signature. 527 539 IPR008271 GO:0004672|GO:0006468
Cca11g02496 763 PANTHER OS02G0152300 PROTEIN 8 760 - -
Cca11g02496 763 SMART serkin_6 409 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02496 763 Coils Coil 361 381 - -
Cca11g02496 763 SMART Ubox_2 695 757 IPR003613 GO:0004842|GO:0016567
Cca11g02496 763 Pfam Protein tyrosine and serine/threonine kinase 414 665 IPR001245 GO:0004672|GO:0006468
Cca11g02496 763 ProSiteProfiles Protein kinase domain profile. 409 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02496 763 CDD STKc_IRAK 415 675 - -
Cca11g02496 763 SUPERFAMILY RING/U-box 688 758 - -
Cca11g02496 763 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 8 760 - -
Cca11g02496 763 Coils Coil 335 358 - -
Cca11g02496 763 CDD RING-Ubox_WDSUB1_like 696 736 - -
Cca11g02496 763 SUPERFAMILY Protein kinase-like (PK-like) 392 664 IPR011009 -
Cca11g02496 763 ProSiteProfiles U-box domain profile. 691 763 IPR003613 GO:0004842|GO:0016567
Cca11g02496 763 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 6 157 - -
Cca11g02496 763 Pfam U-box domain 693 758 IPR003613 GO:0004842|GO:0016567
Cca11g02496 763 Gene3D HUPs 7 162 IPR014729 -
Cca11g02496 763 Gene3D Transferase(Phosphotransferase) domain 1 482 691 - -
Cca11g02496 763 Coils Coil 268 302 - -
Cca11g02496 763 Gene3D Phosphorylase Kinase; domain 1 388 481 - -
Cca11g02496 763 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 692 761 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02496 Cca-Chr11 52128233 52133568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02496 4 759 Plant U-box Gene Family AT5G57035 52.866 0.0 811
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Cca11g02496 PK_Tyr_Ser-Thr 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02496 - - gmx:100805896 1322.76