LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca11g02496	ATGTCCACACCGCCACCGAGATCGGTTGCCGTTGCCGTGAGCGGCGGCGTGAGGGGTAGCCGGCGAGCGGTGCAGTGGGCGGTGGAGAATCTGGTCCCTCAGGCGGATAGGTTCATCTTGGTTCACGTCATCCCCCCAATAACTTCAATTGCAACACCAACTGGAGAGTATATTCCCGTTTCGGAAGCAGACGCCGATGTTTTAGCATCTTGTGTGCAGGATGTCAAACTAAAATCTCAACAAATCTTCCTTCCCTTCACCAAACTCTGCGATTCGAACACGATGGAAACCGTACTGCTAGAAGATGACAATGTTGCAGAAGCACTTCTTAGCTTTATTTCGGAATCCAGGGTCCAAACATTAGTGCTGGGTTCTGACTCGTCAAATTTTATAACAAGGAAGCTAAAAGGACCTGGAATACCAACTACCATTCTAAGATGTGCTCCTGATGGTTGTGATGTATATGTTGTAGCTAGAGATAGAATTATATCAAAGTTGGCTGATTTTTCATCTTCACATTCTCATGAAACTAGCCAAAGGTACTTCATGTCTACTAAAGTAAATAAAGCAGACAATGATGCTGGTATTGGTAGAGAAATGTCTGGAATTAGTTCATCCTCAACAGAACCTAAAATTCTAAAGAATTTCAAATTTTTATCAATATCTGAGCGTAGTTACATTGGTCTGCAAACATTTAGTCATCGTAGGGATTCTTTTGAAAATTCTACCAAAAATGAAGAAGAAAATCCAGAAAACTGTGGAGATGATATTGAAGCTATCAGCCTCCATTCATTTGATTCCATTGCTTCTGCACAACGTGAACAGTTAGTCATGCAACAAGAAGTGGAACGGCTGCAGCAGGAGTTGCAAAATACTATCGCCATGTACAAACAGGTTTGTGAAGATCTGGTTCAAGCTCAAAACCAGGCCCTTTTACTTTCTTCTGAATCTCTTGAAGAAACTAAAATAGTAAATGCTTCCCTAAAAAGAGAAGAGACTTTGAGAAAGATTGCTGCTGAAGAGAAAACAAAGTATTTAAAAGTGATGAAGGAACTTGAGGAGGCGAAAAGTAAGTTTGCCAAAGAATCATATGAAAGACAGATGGCTGAACTTGATGTCCTTAGAGAATCAATAGAAAAACAGAGAATTGTCGATACATTGCTCTCAAATGACAGAAGATACAGAAAATACACCATGGATGAAATCAAGATAGTGACGAACTTCTTTGCTGAGGATTTGATAATTGGTGAAGGAGGATATGGGAAAGTTTATAAGTGTAATCTTGATCACACACCAGTAGCTGTAAAGGTTCTGCATCAGGATGCAATCAACAAGAAAGAGGAGTTTCTGAAAGAGGTTGAGATTCTTAGTCAACTACATCACCCTAATATGGTCTTGTTACTAGGAGCCTGTCCGGAGAATCGTTGCCTTGTTTACGAGTACATGGAAAATGGAAGTTTAGAAGACTACATTCTCAACAAAAATAGCAAACCACCACTTCCTTGGTTTTTTCGATTTCGTATAGCTTTTGAAATGGCTTGTGGACTCTCATTCTTGCATAATTCGAAGCCAGAGCCTATTGTTCATCGAGATATAAAACCTGGCAATATCTTGTTAGACAGAAATTATGTGAGCAAAATTTCAGATGTTGGTCTGGCTAAACTCCTTGCAGAAGTCGTGCCTGACAATATCACAGAGTACAGAGAATCAATGCTTGCCGGTACTCTGCATTACATGGACCCAGAGTATCAGAGAACTGGCACTGTCCGACCAAAATCAGATGTATATGCTTTCGGAGTTATAACTCTGCAATTGATAACTGGTCGCCATGCACGTGGACTCATTATGACTGTTGAAGATGCAATCAGAAATGGTTCCTTCCGTGATATTTTAGACACATCAGCTGGAGATTGGCCACTAGATGAGACAGTGGAATTGGCTAAAGTTGCCCTTAAATGCACTGCCCTCAGATGCAGAGATAGACCAGAACTTGATACTGAAGTTCTTCCACTGCTCAAAAGATTTTTTGATGCGGCAAATGCTAGTGCAAGGATGGGAAGAAATAGTGCCAGTGCACCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGATGATCCATATATTGCTGCGGATGGTTTCACTTATGAGTACATAGCAATCAAGGCATGGCTTAGCAAACACAATGTATCACCGATGACAAAGCTTAAACTCCAGCATTCTGTGTTGACTCCAAACCATACTTTACGTTCTGCCATTCAGGAGTGGAAGTCAGGAGTGACCTTTTGA	2292	0.4106	MSTPPPRSVAVAVSGGVRGSRRAVQWAVENLVPQADRFILVHVIPPITSIATPTGEYIPVSEADADVLASCVQDVKLKSQQIFLPFTKLCDSNTMETVLLEDDNVAEALLSFISESRVQTLVLGSDSSNFITRKLKGPGIPTTILRCAPDGCDVYVVARDRIISKLADFSSSHSHETSQRYFMSTKVNKADNDAGIGREMSGISSSSTEPKILKNFKFLSISERSYIGLQTFSHRRDSFENSTKNEEENPENCGDDIEAISLHSFDSIASAQREQLVMQQEVERLQQELQNTIAMYKQVCEDLVQAQNQALLLSSESLEETKIVNASLKREETLRKIAAEEKTKYLKVMKELEEAKSKFAKESYERQMAELDVLRESIEKQRIVDTLLSNDRRYRKYTMDEIKIVTNFFAEDLIIGEGGYGKVYKCNLDHTPVAVKVLHQDAINKKEEFLKEVEILSQLHHPNMVLLLGACPENRCLVYEYMENGSLEDYILNKNSKPPLPWFFRFRIAFEMACGLSFLHNSKPEPIVHRDIKPGNILLDRNYVSKISDVGLAKLLAEVVPDNITEYRESMLAGTLHYMDPEYQRTGTVRPKSDVYAFGVITLQLITGRHARGLIMTVEDAIRNGSFRDILDTSAGDWPLDETVELAKVALKCTALRCRDRPELDTEVLPLLKRFFDAANASARMGRNSASAPSQYYCPILQEIMDDPYIAADGFTYEYIAIKAWLSKHNVSPMTKLKLQHSVLTPNHTLRSAIQEWKSGVTF	763

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cca11g02496	763	CDD	STK_N	8	159	-	-
Cca11g02496	763	ProSitePatterns	Protein kinases ATP-binding region signature.	415	436	IPR017441	GO:0005524
Cca11g02496	763	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	527	539	IPR008271	GO:0004672\|GO:0006468
Cca11g02496	763	PANTHER	OS02G0152300 PROTEIN	8	760	-	-
Cca11g02496	763	SMART	serkin_6	409	676	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Cca11g02496	763	Coils	Coil	361	381	-	-
Cca11g02496	763	SMART	Ubox_2	695	757	IPR003613	GO:0004842\|GO:0016567
Cca11g02496	763	Pfam	Protein tyrosine and serine/threonine kinase	414	665	IPR001245	GO:0004672\|GO:0006468
Cca11g02496	763	ProSiteProfiles	Protein kinase domain profile.	409	697	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Cca11g02496	763	CDD	STKc_IRAK	415	675	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca11g02496	Cca-Chr11	52128233	52133568	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca11g02496	4	759	Plant U-box Gene Family	AT5G57035	52.866	0.0	811

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Cca11g02496		PK_Tyr_Ser-Thr	1.2e-41	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca11g02496	-		-	gmx:100805896	1322.76

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